RNA id: XM_036978254.1


Basic Information

Item Value
RNA id XM_036978254.1
length 4034
RNA type mRNA
GC content 0.46
exon number 25
gene id ect2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69871717 ~ 69907563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTCTTGTCCAATCAGATTACAGCCGCCTCGTATGCCTTGCTTTTTGAATTCAGGTTGAGCGAATTTTGTTGTCCACGGGCGTACAATGTCCCAAACAAAATGGATTATGCAGACAAACAATTAATTCCGACAACCAAAGTTAATTTCGCGTTTTCAGTATGCATTAGATAAGATTTAAACCAGGAGTTAAGTAAATATTTGTTTGTTGTACCGCAAAcgcatataatatatatatatatttacttttAGAGACAGGAATAACCTGCAGATAGCAGTGTCAATTCAGTTAGCCAACCGCTAGCTGAACTGGTCGACTAGCCAGTTTACAACTGTCACCTGCgattatttttttgttatttccaAAGCTTTGGGATTGTGCCACCACCCCTGTCACACTGCCATGGCTGACAGCAGCATAGTTACTTTGGGGATGGCTCGTAGCCTGCTGGTGGACTCCTCTGTGTATGACTCCAGGTTGGCTGAGACTACTAAGGATGTATTCCTGAGTTTGGACTGTGAAGACATGGAAGAGATGCTGCATCGTGTCGAAACCAGAGTCGTTCTTGTGGGAGAAGCTGCCAAAAATGGAGCACTTGTTAAAGCACTGCAGGCCGTCAGAATAATGGAAGTTCCGGTGGTTAAGATTAAAGGAGGGGAACCGGGTGTTGAGGCTGGAGAGAAATTTATAAAATCTATAGTCAATATGGATATCAACGTGCCTTGCATAAAGACAGACAATGTCAAAGAGTTTGGAGACGGAGAAAACACAGAGTTTGAGACTGTGTTTGTGCTCGCAGACTTTGCCTCGCCTGACTACAGCTACCTTTACAAACATGACAACCGGATCGTGGGCCCCCCGGTTGTTCTGCACTGTGCGGGACGAGAGGAGCCCCTGCCATTTTCCTCTCGTCCTTTATACTCGACCACCATGCTCAACTTGTCACTGTGTTTCACTGGTTTCCGCAGCAAAGAGGAAGTTAAAAACCTGGTGAATCTGGTGCATCACATGGGTGGCGCCATCCGTAAGGACTTCAGCACTAAAGTCACCCATCTCATTGCATACTCCACTCATGGCGAGAAGTACAAGCTTGCTGTGTGTATGGGCACGCCCATCCTCACCCCAACATGGATCCATAAGGCCTGGGAGCATAGAGATGATGTTAAGTTCCATGCTGGAGATGAAGAGTTCCGCACAGAGTTCAAAGTTCCCCCCTTTCAAGACTGTGCGCTGTGCTTCCTGGGCTTCTCAGACGAAGACAAGACCAACATGGAGGAAAGGACAGTCAAACATGGTGGCAGCTACTTGGAGGTTGGAGATGAGAAGTGCACTCACATGGTGGTGGAGGAAAACTCTGTCAAGGAGCTGCCATTCGTCCCGTCAAAGAGACTTTATGTTGTCAAACAGGAGTGGTTCTGGGGGAGCATACAGATGGATGCCAGAGCAGGGGAGTCCATGTACTTCTATGAGAAGATGGACAGTCCTGTGATGAAGAAGGCTGTGTCCCTGCTGTCCCTCAACACACCCAACAGTAACCGGAAGAGGAGGCGTCTGAGGGACACTCTGGCCCAGCTCACCAAGGAGACGGAgatctcccccttccctcccccccGCAAGAGGCCTTCTGCCGAGCACTCCCTGTCCATTGGTTCTCTGCTGGACATCTCCAACACCCCAGAGACCTGCAAGGCCCTGGCAGAACACTCCCGGCCGTCGAAGAGCTCTACACCTGCTGTCCTGAAGCAGTCTGCAAGATGGCAGGTCTCCAAGGAGTTATACCAAACAGAGAGCAACTATGTGGATATTCTCACCACAGTCATGCAGTTGTTCAAACTCCCCCTGGAAAAGGAAGACCAGGTTGGAGGACCCATTTTGGCTCAGGAAGAAATCAAGACCATCTTTGGCAGCATCCCAGAGATCTATGATGTACACACCAGGATAAAGGCCGATCTGGAAGTGCTGGTTATGGACTGGTCTGAGGACAAGAGTGTCGGGGACATCATTCTCAAATACtctAAAGACCTGGTGAAGGCTTACCCACCATTCGTCAACTTCTTTGAGATGAGCAAGGATACGATAGTGAGGTGTGAGAAGCAGAAGCCACGTTTCCATGCTTTCCTCAAGATCAATCAGTCGAAGCCCGAGTGTGGGCGGCAGAAGCTGGTGGAGCTTCTGATTCGCCCCGTGCAGAGACTGCCAAGCGTTGCCCTCCTTCTCAACGATATTAAGAAGCACACTGCCGATGACAACCCTGACAAAATCACTTTGGAGAAGGCAATCGAATCACTCAAGGAAGTTATGACTCATATAAACGAAgacaagagaaagacagagggacagaagcaGATCTTTGATGTTGTCTATGAAGTTGACGGCTGCCCTGCCAACCTGCTCTCGTCCCACCGCAGCCTGGTCCACAGGGTGGAAACCATCGCCCTGGGAGACAAACCCTGTGACCGAGGTGAAAATGTCACACTCTTTCTCTTCAACGACTGTCTCGAGATTGCCAGGAAGAGACATAAGGTGATCAGCACCTTCAGGAGTCCTCTGGGCCAGACGCGGCCTGCAGCCCAACTCAAACACATCACCCTCATGCCTCTGTCCCAGATCAGGAGGGTCTTGGACCTGCAGGATACAGAGGaTTGCCATAATGCCTTTGCCCTGGTGGTGCGCCCGCCCACGGAGCAGGAGAATCTTCTCTTCAGCTTCCAGCTGACCACTGAGGACACAATGAAGTCAACCTGGCTGAAGATGCTCTGTCGCCAGGTGGCCAATACCATCTGCAAGGCTGACGCGCAAGATCTAATTCAGTGCACTGAGCCTGACTCTGTCCAAGTGAGCACAAAGGATATGGACAGCACACTGAGTAAAGCCTCTAGAGTCATCAAAAAGACTTCAAAGAAGGTAACGAGAGCCTTTTCCTTCACCAAAACACCCAAACGGGTGATCCAGAGAGCCTTCATGGCCAACAGCACCCCAGATGACAACAGCCCTGGCCCTAGCTCTGAGAACATGAGCCGTGTGGGCAGCAGTGCCACCCTGTCTGCGATGCACTCTCCGTCCATGGTCAACCTGCCATCCATGTTTGAGAGGAAGTACCACACATTCAGTCGCTCCACAACCCACCTGTTCTGATTGACTCAGAGGGGATAAACCCAGCACGCTCTTCTGCACCGTGCACCCCTCACTGTAATTCAATTAGCTCACCTTTCTGCAATGGTACTGCTGATTGGCAGGTTCTGTAAGTTTTTTTAATTAACACAAGTTCAGGCAGATATTGTCCGACTTGGAAAATGAAGGATGTGTATACCCTTGTATTTAGTGTTTACTTGCAATGTTACAAGTTGGCTTCGTGTGGTAGACATTTTGACATATGTAATAAACAGCCACATATATAGAGAAGACATTCACTGACATTTTATATAGTTTTGTTGTAGAGGTATATAATTCACTGAATGATTAACCAATGAAACTATATCTTTGTTTTATGGGAACAAGCCTGTTGGTTTCACATACTATAGTTTCCAGCTTTTATAAAGCTCTTGAAATGTTTTTACTTTTTATACAAATGATCAGGAATAGTGGAACAAAAGCAAACAAGCTGTAAGTCTAGTTTTTAGTTGATTTATTTTGTTGTCAAGTGGTTGTTTTTGTTCAGAAGGGACTGGGAATGATGCTGCAGTACATATTTATTCTTCATAATCATTTTATAAATAGTCTATAAAAAGCATTTTTCTCTCTTGCTATTAATGTATAATTGTGCCTCTATCctgtttgtctgtcataattggtACTGTATCATCTTCCAATGTATCTGTATCCAATGCACTTACACATGTACATGATCCAACTTTAAACTTATTTCTAGTGGGTTTTTTCAGTTATAGGGTGTTCACTACTTTTGTCAACAgattaattaaaaaataaataagcacCCCCCCATCCCCATTCATCTGTATTGAATAGTGGCTATTATTATACAGTCACTTATGGTTTGGAATTGAATTATTTTAATAAAATCCCTTGTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490332 lncRNA upstream 70878 69799951 ~ 69800841 (+) True G432959
TU490304 lncRNA upstream 117191 69754324 ~ 69754528 (+) True G432931
TU490280 lncRNA upstream 134416 69737054 ~ 69737303 (+) True G432916
TU490278 lncRNA upstream 137548 69733886 ~ 69734171 (+) True G432914
TU490255 lncRNA upstream 164974 69706115 ~ 69706745 (+) True G432892
TU490392 lncRNA downstream 9587 69917150 ~ 69917431 (+) True G433018
TU490394 lncRNA downstream 10500 69918063 ~ 69918303 (+) True G433020
TU490455 lncRNA downstream 94208 70001771 ~ 70031923 (+) True G433080
TU490483 lncRNA downstream 124448 70032011 ~ 70032322 (+) True G433108
TU490489 lncRNA downstream 132787 70040350 ~ 70040577 (+) True G433114
XM_021604109.2 mRNA upstream 2393 69758228 ~ 69869326 (+) False mcf2l2
XM_021604119.2 mRNA downstream 158292 70065855 ~ 70348330 (+) False nlgn1
XM_021604121.2 mRNA downstream 158292 70065855 ~ 70348330 (+) True nlgn1
XM_021604123.2 mRNA downstream 547902 70455465 ~ 70738345 (+) False LOC110524461
XM_021604126.2 mRNA downstream 831645 70739208 ~ 70836826 (+) False si:ch211-51h4.2
XM_036978257.1 mRNA downstream 831645 70739208 ~ 70836826 (+) True si:ch211-51h4.2
TU488020 other upstream 1657615 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 1768185 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 2407396 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 2407576 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 2823555 66981949 ~ 67048164 (+) True G429156
TU492109 other downstream 1052047 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 1311226 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 1391052 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 1768308 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 2595897 72503460 ~ 72504435 (+) True G436403

Expression Profile