RNA id: XM_036978258.1


Basic Information

Item Value
RNA id XM_036978258.1
length 4204
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110524463
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70836815 ~ 70870397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTGAACCGTTTGGCTCTTTCTCCACTAGCAAGCAACCTCACAATGTACCCCAATTGCTCTTCAATGTAATTTTTTAAAAGGATTTATCAAATGCTACACTTATGTAATCAAAACACATGGCTCATTTGGGATTTTAACTACCAAGCTGCCATCTCGGAGTAGACTTATAACGCTTTATTGTGACTATATTTTAGAAAATAGCGGTGGAGGAGGAGATTCCATATAAGGAGCACAGCAGAGAAGGCACCCCTTGTGTAATCTGGGCATTTAAACTGAAGAAGGATACTGTCATACTTGAATGACGTTCGGGCACATGGCCTGTGTCCTGTTTGCTGACCTCATGGTGTAACCAGGTATAAAGATGAGCATAAGCAGTGATGAGGTCAACTTCCTGGTGTACAGATACCTACAGGAGTCAGGGTTTTCCCACTCAGCCTTCACGTTTGGGATAGAGAGCCACATCAGTCAGTCTAACATCAATGGAGCCCTGGTGCCCCCTGCTGCCCTCATCTCCATCATACAGAAGGGCCTGCAGTACGTGGAGGCTGAAGTCAGCATTAATGAGGACGGTACACTGTTTGACGGGCGGCCGATCGAGTCCCTGTCGCTCATCGACGCGGTAATGCCGGACGTGGTGCAGACGCGGCAGCAGGCCTACCGAGACAAGCTGGCCCAGCAGCAGGCGGCCCAGGCCCCCCCAGCCAATGCCACCAACATGACAGCCAACACCAAGAATGGAGAGAACACGGCCAATGGCGAGGAGAACGGAGCGCACGCTTTAGCTAATCATGCACATGCTGATGAGGTGCTCTCTGTGTGCCATACAGACAACCATGCAGACTTGATGGAGGTGGACGGGGACATGGAGATTCCCCAGAACAAAGCCATGGTGCTCCGAGGCCACGAGTCAGAGGTGTTCATCTGCGCTTGGAACCCTGTCTCCGACCTGCTCGCCTCAggGTCTGGGGACTCAACGGCGCGGATCTGGAACCTGAGTGAGAACAGCACCAGCAGCTCCACGCAGCTTGTACTGAGGCACTGCATACGGGAGGGAGGCCAGGATGTCCCCAGCAACAAAGACGTTACATCATTAGACTGGAATAGTGAGGGAACTTTACTAGCAACCGGCTCATATGATGGATTTGCCAGGATCTGGACAAAGGATGGTAATCTTGCCAGTACCCTGGGTCAACACAAAGGTCCCATTTTTGCATTGAAATGGAACAAGAAAGGAAACTTCATTCTTAGTGCAGGAGTAGATAAGACTACAATCATATGGGATGCTCACACAGGAGAAGCCAAGCAGCAGTTCCCGTTCCATTCAGCGCCTGCTCTGGATGTGGACTGGCAGAGCAACAACACGTTTGCCTCCTGCAGTACAGACATGTGCATCCATGTGTGTAAACTTGGCCAGGACAGGCCCATCAAAACATTCCAAGGACACACGAATGAAGTAAATGCAATCAAATGGGATCCAACCGGTAACCTGCTGGCCTCTTGCTCAGACGACATGACGCTGAAGATCTGGAGTATGAAACAGGACACATGTGTTCATGACCTGCAAGCTCACAGCAAAGAGATCTACACAATCAAATGGAGCCCCACTGGTCCTGGAACCAACAACCCCAATGCCAATCTCATGCTTGCCAGTGCATCCTTTGATTCGACGGTGCGGCTGTGGGATGTGGACCGAGGCATCTGCATTCACACGCTAACCAAACACCAGGAGCCTGTCTACAGTGTGGCATTCAGCCCCGACGGCAGGCATCTGGCCAGTGGCTCCTTTGACAAGTGTGTTCACATCTGGAACACGCAGACTGGTGCTTTAGTCCATAGttacagggggacagggggaatcTTTGAAGTTTGCTGGAATGCAGCAGGTGACAAAGTGGGAGCAAGTGCATCAGATGGATCTGTTTGTGTATTAGATCTGCGGAAGTAACACTCCTTGTTGGAAGCCATGGACCGACAGTGAATGTGTACATAGCCAAAATAACTGTCCCTGCCCCATGTACTGCTAGTCCCTCTGAACCATGGCCGGCCACTACAGACCAGAAACAAGCACCCCAACCTCTACACAACAGATTCAGGAGCAAGGACACAATCTGTGCAGCAAATCCTTCGAGACATTAAAGGGACACagacaaaaaaactaaaaaaaagatCCGTATATGTACCAACATTTCAAAGCTATTTTGCTTTTAGATCTTTAAACCATCCTCATcaagacaaaaaaaatattttaaacttTGTTGGTAGTTCAGTCTCTGTGTACAGACATATCGGCTTTCCCGTCCTGCGGCAGGCAGTTaggttttaaaaaatgatttcaATGTTTAAGTTGATATTTTTGGGGGTCACAGCTGCATGAAGTGGAGGAGTCCTCTTTTTATACACACTCACAAAACAGTTCTTGAAAAAAATAGTCTGGTAGTGTGCGCTTTGTGGTTCAAAACAATATGGGGACTTGTTTTTACTGTTGACATCTAAATGCAGTAGTTTTCATTTCTTTCCTCTACAGGAGACATATTGATTCTCCTGACTTAATATTATTACAAATTAACATTGGGTGCACATGAAGAGGCATTGTACAGCTGGATGCTTTAAAACCATTTTTATGGTTGGTTTGTGCACCATTGATGGAGCTAGAAAAACGTTCCATGATTACCCCTGGACAAAGCTGTACTGCTGTTGTTATCATGTGGAAACATCCAGTATTGGATCGCTTAAAGAAGAGAAGCAGACGAGTCagtaatgactgttccctccctCCAGTGTGAATGGTTGGAACTGTGATGTCCACTAGACCTTTCACCAGAGTGCTTCCACTGGGCAAACTGAGGCCCCTTTTACAACATATAGCAAAAAGGGAAGACTTGCTTTAAGTTTTGTATTCTTCTAATGAAAACTTAGCTGATAATGTGATTCTCTCAGATGTTTTTCCAGATACATTTCATATTGCTGATGTATCATCTGTCACAACAAAACTTCCATTAAGCTTTTACTCAAAGTGGTTTTACATGTTGATTAGGCAAAGTTATCACTCAAGTCCCATAGACCATTTCCCAAACTAGATATTGACTGAGGTTATTTGGATCACAAACAAGCAATGCTGTTTTCAGAGGAAAAATGTCATCTTAAAGCAAGTCTGGGTGTTGGGCTAGGAATCAGAAATCACATGGAGTGACATGCACCATATAAATTATTTTTGTGCTGCTCAATATTTAAAAAAGTTAACTGAATTTGAAGCATAACCATTTAAAGACATGCGACAGACACTGTGTGGTATCTTTTCAAATCATTGTGAGAAGAGAATTCCCCTGCTGGACAGTAATCAATCAATagttaaatattttttgtttgaCTTTCAACAATCTTAATTTGAAATGGGACACATCTGAATATTCACCGGTTACAGTCTAGATATCCTGTTAAATGcagtgtgtttgtttttttcaacAAAGAAAGCCAGTCTGATTTTACAGATGGCAGAATGAGGTTTTGGCTTGATGGAAATGTGAGGATCCATGGCCAGGATCCCTTGTTCCCCTGGTTTAAGACTTATGTTAGCGGTTTATTTTTTGGGATATCACTACACATATAGGGGCAGATGCATGGGCCCATATGAAACCTACTCCTGGTCTCAAAAAGCACTTTCAATTGAAACATTGAGGATGTTTATTATTAGAGTAGGTTTAATCAGGGTCTGTGCAACCATCCCATAAATGTGCATTTTATACAGTGTAGTCCTTTTAGATCTGTAAAAACTGTCTACTCTAAGTAGATTGTACCATCTGGACACTATTTATTATACAGTCTATGACAGTGGAAGGTTATTTTAGGTTTTCTTTAATGATAAATCTGCTGTCCTAGTGTCTGCTTTGCCCTTCATTTTCACTACCTGAATTCTAATCATATTCTTATGTGTATGTCCTCTGGACATTTTGTACTCTTTTAAAACTTTTGTAATTCATATTTCTTTGTAGCCTAAAGGAGTAAAATGTAAGATTATTGGAGATAATCAAGTACAGTATGTTCCAGTTTAATGATTTTTTGGGTTCCACATTGCATCATGAGTGCCCACGCCCCACCCTTGGTTTCTCGagtcaaaatgtgtttttgcagaTTGCATTGATCTGTTGTAATTTGAACCAGATCTGAAAAAAAAAGTCcagaataaaatatattttgatattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491955 lncRNA downstream 98591 70737812 ~ 70738224 (-) True G434508
TU491951 lncRNA downstream 106466 70730117 ~ 70730349 (-) True G434504
TU491940 lncRNA downstream 121430 70715163 ~ 70715385 (-) True G434493
TU491935 lncRNA downstream 125984 70710433 ~ 70710831 (-) True G434488
TU491922 lncRNA downstream 144636 70688943 ~ 70692179 (-) True G434475
TU492600 lncRNA upstream 13126 70883503 ~ 70885481 (-) True G435083
TU492724 lncRNA upstream 67978 70938355 ~ 70938772 (-) True G435199
TU492734 lncRNA upstream 83340 70953717 ~ 70953979 (-) True G435209
TU492738 lncRNA upstream 89027 70959404 ~ 70960042 (-) True G435213
TU492739 lncRNA upstream 89923 70960300 ~ 70960576 (-) True G435214
XM_036979053.1 mRNA downstream 832098 69950204 ~ 70004717 (-) False LOC110524459
XR_002473388.2 mRNA downstream 915721 69920157 ~ 69921094 (-) True LOC110522884
XM_021604111.2 mRNA downstream 1002664 69825310 ~ 69834151 (-) True LOC110524457
XM_036978256.1 mRNA downstream 1002962 69825310 ~ 69833853 (-) False LOC110524457
XM_021604097.2 mRNA downstream 1085367 69744586 ~ 69751448 (-) True LOC110524454
XM_036978272.1 mRNA upstream 151295 71021672 ~ 71033161 (-) False LOC110524467
XM_036978273.1 mRNA upstream 151295 71021672 ~ 71033577 (-) False LOC110524467
XM_036978274.1 mRNA upstream 152233 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA upstream 152290 71022667 ~ 71033161 (-) True LOC110524467
XM_021604145.2 mRNA upstream 175665 71046042 ~ 71056219 (-) False LOC110524468
TU491077 other downstream 1312025 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 1830709 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2081758 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2129367 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 2484070 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 120515 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 197648 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 358805 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 416013 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 1170585 72040962 ~ 72121697 (-) True G436172

Expression Profile