RNA id: XM_021604142.2



Basic Information


Item Value
RNA id XM_021604142.2
length 1322
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110524468
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71046042 ~ 71057781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGAAAGAGACCTGAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA

Function


GO: NA

KEGG:

id description
K03898 KNG, BK; kininogen

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU492706 lncRNA downstream 26536 71017404 ~ 71019623 (-) True G435182
TU492787 lncRNA downstream 35556 71006234 ~ 71010603 (-) True G435246
TU492783 lncRNA downstream 41690 71004249 ~ 71004469 (-) True G435244
TU492782 lncRNA downstream 42211 71003677 ~ 71003948 (-) True G435243
TU492779 lncRNA downstream 47067 70998782 ~ 70999092 (-) True G435240
TU492701 lncRNA upstream 8759 71066540 ~ 71067820 (-) True G435177
TU492829 lncRNA upstream 55018 71112799 ~ 71114579 (-) True G435282
TU492827 lncRNA upstream 57491 71115272 ~ 71126065 (-) True G435280
TU492830 lncRNA upstream 58053 71115834 ~ 71116092 (-) True G435283
TU492839 lncRNA upstream 73697 71131478 ~ 71131685 (-) True G435291
XM_036978273.1 mRNA downstream 12582 71021672 ~ 71033577 (-) False LOC110524467
XM_036978272.1 mRNA downstream 12998 71021672 ~ 71033161 (-) False LOC110524467
XM_036978274.1 mRNA downstream 12998 71022610 ~ 71033161 (-) False LOC110524467
XM_036978275.1 mRNA downstream 12998 71022667 ~ 71033161 (-) True LOC110524467
XM_021604127.2 mRNA downstream 175762 70836815 ~ 70870397 (-) False LOC110524463
XM_036978279.1 mRNA upstream 11584 71069365 ~ 71106197 (-) False LOC110524470
XM_021604152.2 mRNA upstream 11584 71069365 ~ 71106198 (-) False LOC110524470
XM_021604157.2 mRNA upstream 11584 71069365 ~ 71106200 (-) False LOC110524470
XM_036978280.1 mRNA upstream 11584 71069365 ~ 71106200 (-) False LOC110524470
XM_036978281.1 mRNA upstream 14617 71072398 ~ 71106201 (-) True LOC110524470
TU492773 other downstream 54361 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 1521369 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 2040053 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 2291102 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 2338711 68699821 ~ 68707448 (-) True G432310
TU492700 other upstream 10244 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 171401 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 228609 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 983181 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 1530503 72588284 ~ 72588576 (-) True G436830

Expression Profile


XM_021604142.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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XM_021604142.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021604142.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
End of interactive chart.