RNA id: TCONS_00031127


Basic Information

Item Value
RNA id TCONS_00031127
length 565
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_015579
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32826235 ~ 32834441 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACATAAATACTCACAATTTAAACTGAATGATTTAAATGTCAAATGTAGCTTTCTTTCTAATTGACTTCTCATTACTGTAGTGAATGCTACCTAATAGCTAATTCAGAATAACAAGTAACTATTTCCAAAAATGGGTGGGTTTAAAGATACATACCAAGACGTTCAACCAGTAACTCTTCGACTTGCAGAAGAAAACGTCACCTCTAGTCTCTACTGCAACTCGGCTGTGGGCATTGAAGCTCATGTGTCCACTTTAGTTGAAGCTTTCTTAGTTGAAGTATACAGATGTAGAATATGTCAATTCACTagcagccacaaagccaagattAGCCATCATGTTATGGAAAGACATGATCCAGTGTCTCCATGTCCACATCTGCCGTGTCTGGAGAAAGAGGATGAAGAGAGTTTGTGTGTAGAAATGAGGGTTAATGATGAAGAGGAAGTCGAACACAACAGTTCTCCATACGATCTAGAGAGCGACCTCCAATCTGGCTCAAAGAGCAATGAGGATCAAATGGACATGGAGCGCATTTCTTTCCTTCTTCCAATGTATGGCATG

Function

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-380 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000132191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033590 lncRNA upstream 106529 32701820 ~ 32719974 (+) False XLOC_015574
TCONS_00033589 lncRNA upstream 179099 32644925 ~ 32647404 (+) True XLOC_015573
TCONS_00033588 lncRNA upstream 188998 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033587 lncRNA upstream 218476 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033586 lncRNA upstream 435529 32387279 ~ 32390974 (+) True XLOC_015570
TCONS_00031131 lncRNA downstream 26948 32854201 ~ 32862149 (+) True XLOC_015583
TCONS_00033591 lncRNA downstream 39322 32866575 ~ 32883571 (+) False XLOC_015584
TCONS_00033592 lncRNA downstream 39323 32866576 ~ 32985766 (+) False XLOC_015584
TCONS_00033593 lncRNA downstream 39323 32866576 ~ 33029428 (+) False XLOC_015584
TCONS_00033594 lncRNA downstream 39334 32866587 ~ 33029428 (+) False XLOC_015584
TCONS_00031125 mRNA upstream 27420 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031123 mRNA upstream 35616 32780138 ~ 32790887 (+) False XLOC_015577
TCONS_00031121 mRNA upstream 69797 32743807 ~ 32756706 (+) True XLOC_015575
TCONS_00031114 mRNA upstream 808132 32016256 ~ 32018371 (+) False XLOC_015566
TCONS_00031115 mRNA upstream 808909 32016516 ~ 32017594 (+) True XLOC_015566
TCONS_00031128 mRNA downstream 8426 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031129 mRNA downstream 15880 32843133 ~ 32846324 (+) True XLOC_015581
TCONS_00031130 mRNA downstream 19349 32846602 ~ 32850621 (+) True XLOC_015582
TCONS_00031135 mRNA downstream 224477 33051730 ~ 33115601 (+) False XLOC_015585
TCONS_00031136 mRNA downstream 224477 33051730 ~ 33175665 (+) False XLOC_015585
TCONS_00031124 other upstream 35617 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 66171 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 119092 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031119 other upstream 123171 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031118 other upstream 218476 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031140 other downstream 362331 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031160 other downstream 929125 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 1073182 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 1075072 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 1099966 33927219 ~ 33933001 (+) True XLOC_015607

Expression Profile

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