RNA id: TCONS_00031131


Basic Information

Item Value
RNA id TCONS_00031131
length 2226
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_015583
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32854201 ~ 32862149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGCATCATGTTTGCTGTGAGGTGCTTTTTGCATTCCGCTGTAGGACATTAGTTCCAGTAGAGGGCAGCATTTCTCCGTAATTCACCTGCTGTGCTTTTAACAAAGACGCCAAGTCTCTCTTCGCCTTCGGCTTTGTTGTTTCATTCGACATAGCTTTAAGTTCTTTGTATTAAGTTATACTTGTATTTAGCTCAAGTTTTACCTACTATCACGTGAAGCACGTTTAGGCTATGGAAAATAATTTAGCACAAGATGTAAACTGAGCTAATGTTATTGCTCACAACTCATATGTCGCTctgatcaaaaataaaaacatccagcCTGAGGTTAACAGGAGAAGTCGACCTTTTGgctttttgaaaatatatatttcttttaagcAGCAGGCATGTGCAATTGACAGCACACTGCATAATTAAAACGACTGTGAAAAGTCCTGAAATTGCCCTGAGAGTTAATGAAGTCGCACAGTGTGATGAGGGAAGATTGTGGTGGAAAGGGGTCAGCAGGCCTCTTCAGGCCTCTCGTCCATGGAAAATGGCTGCTGTCAGCCGTCGAACATTATGGGAATCTGAATGCCCACACAGTACACTCGAGCCGAGATTAATGACTTCAAATAGTGGCGTTTGGCAGAAGAGTTTCGTTTGCACTCTCAAAGGGACAAAAAACGTTGAGGAGGATGAAAACTTTGGATGTCTGGTGTCAGGAAACAGACACATCACATCAACCCATGTTTGTCCTTCCGTCTCCTTCACTCCCCCGCTTTTTTGGCACAGCGACCCGCGGTGCTTACTGTAAGCCTGCAGGGGCCATTCCGGCCCGCTGGCCTTTTCCTCCACACCTGTTTCAGAGGAGACATGTTGTGTTAGAGCTTCAAGTCCCTTCCACTAATGAGCAAAGCGTCCCACTGAAAGGAACATTGAGCGTCTGCCCCCCTCCCACTCGGGATGAAAGTGCGAGAGAGACATGACCAAAGTCGTCTCCGCTTTGACAAACATGAAAAGCTTCCCCGGCGTGTAACTTGAGGAATTGGACACTCAGAGAAGAGGGAAGGGCTTTCAGTCGGACTAGGCTTGCAACCGACCTCTCCAACCCCCCTTGCAAGTTTCCACTTATGAGAAAGAGGACAAATGAAGAAGAAAGAGGGAAGCAAGAGAAAGGGGCCCTCAGCGTGCGAACAGCACCTCTCGGGTTGCTCGAGATTGTTCAAAGTGACTGCGCTTCACAGAGCCCCTTCAAGAGAACATCTCCGGCTCTTCACAGCCATCGCATCTGACAAGCAGCGGGCTCCTGTTAAAAGCACTGTCGAATTAGatctacaaaacaaacccatGCTACACTAGAGGTGGACTTGGTTCGAGAGCACGCGTGTGCCTCAACGGCGCATAGTTTGAACGATTGAAAGTGTAAAAGTGCGACGACACTGGTCCCCGAGCACGCGTGGGGTGTGTTTAATTTGACTGATATAGGGCGCCGCAGACGGAAGTATGTCTAATGAAGGGGAGAGATGTACTCTTGTGTGACAGCCCTCCAGAAGCAAGGGCTCACAAAAAGCTCTACAGAGGCACAGAAACAAAGCAGCGAGCTTTTGATTCTGCTGTACAGCTGACACTTCAGCTTCTCTTGTTCTCCTAGCCAAAAGTCCCTTTGTTAAACATTCGGTGTTATAGGATTTTGAAAAGGTAAGAAATATAGAGTGGCCCTGAAAACTATACTTTACTGACATTTTCAAATGTATATGCATATTGTCATGTGTAACAATATGCAGAGGTAATTATTTGAAAGAAATATAGAGCACTGAATTGTGAAACTTTGTAGATACACAGCCCAAAATTCCGGCAAATGTATTTGAATCCTTGATTTTAGCTAATTGTTTTCTATATTCACAGGTCACATAtcaaatgtataatgtatataaaCTTACTAACCACTTTATTAGatgcaccttactagtaccgttttggatcctcttttgccttcagaactgccttaatcctttgtggcatagatttaacaaggtacttgaaatattcctcagagatttcggtccatattgacaagatagcatTACATAgttcctgcagatttgtcagctgcacatccatgatgtgaattttctgttccaccacatcccaactgtgctctattggatagggtctggtgactgtggaggccatttgagtacagtgaactcaatggGCCCAAGATGTGccaagaccccccc

Function

GO:

id name namespace
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:1990234 transferase complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033590 lncRNA upstream 134227 32701820 ~ 32719974 (+) False XLOC_015574
TCONS_00033589 lncRNA upstream 206797 32644925 ~ 32647404 (+) True XLOC_015573
TCONS_00033588 lncRNA upstream 216696 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033587 lncRNA upstream 246174 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033585 lncRNA upstream 463227 32385688 ~ 32390974 (+) False XLOC_015570
TCONS_00033591 lncRNA downstream 4426 32866575 ~ 32883571 (+) False XLOC_015584
TCONS_00033592 lncRNA downstream 4427 32866576 ~ 32985766 (+) False XLOC_015584
TCONS_00033593 lncRNA downstream 4427 32866576 ~ 33029428 (+) False XLOC_015584
TCONS_00033594 lncRNA downstream 4438 32866587 ~ 33029428 (+) False XLOC_015584
TCONS_00031132 lncRNA downstream 4438 32866587 ~ 33029428 (+) False XLOC_015584
TCONS_00031130 mRNA upstream 3580 32846602 ~ 32850621 (+) True XLOC_015582
TCONS_00031129 mRNA upstream 7877 32843133 ~ 32846324 (+) True XLOC_015581
TCONS_00031128 mRNA upstream 15307 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031126 mRNA upstream 19760 32826235 ~ 32834441 (+) False XLOC_015579
TCONS_00031125 mRNA upstream 55118 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031135 mRNA downstream 189581 33051730 ~ 33115601 (+) False XLOC_015585
TCONS_00031136 mRNA downstream 189581 33051730 ~ 33175665 (+) False XLOC_015585
TCONS_00031137 mRNA downstream 190020 33052169 ~ 33079331 (+) False XLOC_015585
TCONS_00031138 mRNA downstream 190211 33052360 ~ 33216194 (+) False XLOC_015585
TCONS_00031139 mRNA downstream 327433 33189582 ~ 33194664 (+) False XLOC_015585
TCONS_00031127 other upstream 26948 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031124 other upstream 63315 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 93869 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 146790 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031119 other upstream 150869 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031140 other downstream 327435 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031160 other downstream 894229 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 1038286 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 1040176 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 1065070 33927219 ~ 33933001 (+) True XLOC_015607

Expression Profile

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