RNA id: XM_021604194.2


Basic Information

Item Value
RNA id XM_021604194.2
length 2229
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110524487
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71435035 ~ 71440118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTTCCGCGTTGTAAGCATTTAATCTATCAACTACAATACCCAGAACCCATTAGGGCAACATATTATACGCAATCACGTTGAGGATTTAAAAGTGGAACAGGACAGTACAGCAGCCCTGACTGAGATGAACTGGGACAACCAGCTGAGCTCCATCCTCTCAGCAGCTGATGGCAGTGTTGCCAAGATGAGGGAGAGACTGACCACGCCAGGGAATTATCCAAAAGGAAGAGAAGTAGATCTCTTTCCAGTCAGGGAGGTGGCTAGTGTGTCAAATTTTGAGCTCCCtcgccccccccctctccccaagtcctccatctctctcctcccccctccctcctccgctGTGCAGTGGGCAGACCTGGCAGCCGTCCAATCACAACTGCAGATCCAGAGCCAGGCCATAGAGTCTCTGACCCAAAGTCTTCAtgacatggacagagagagacactctcAGCAGCGCCACATACAGGCACTACAAGACGAGGTTCGCAGGCTGCGAGAGCAGgcgacggagagggagagagagcgggaacaagaaagggatggagagaggagagggtcagggatGACTAGTCCAGAAGTGGAGAGAAGGATGGACCAGTGGAGGAGAGATGTGGGCCGTGAGCTCAGCACTCTGAGAAGGCACATCACCGGAGCCACATCGCAAGGCAAcctggaggagagTTTCTGCTCTAAGCTGCGAAGGGAGGAGTTGGATCATTTGAGGAGAGAGGTGGACACACTCAAAACCCAGCTCAggaggCAGGAGGAGGACATGTTTCTTCAGCAGTCGGAGGCCAGAGAGACGAGTAGGCAGTATGAACACAGCTGCAAGACACTAGAGGAACTAACAGACAGCTACAGAAACCACAGCTTTGACCTGGCCAAGACTGTttctcaatacacacacacagagcaggaggTCCGCcagatcagGATAACTGTATCGGAGCTGAAGGACGAGATCAGGAGTCTGATTCTCCGGGAGAGACATCACACACCTACTGTTACACTACACACAGCAGttcCAGCATTAGCTGCCTTCTCCCGCTGTAAAGATGCCAGGGGTCAAAAGGCGGAGCCAGACTCTGACTCTGACGACTTCAGTCCCACCCCCAGTCTGGCTGAGGTCAGCTCTGATgacctgtcctggctggatgaCAGAGACACAGCTCCTCCTCTAGCAGTACCTCGGGTACATCAGAGCTCCCATTCTGCAGGAAATGACCTCAGAGGACCAGGAAGTGGCCTGGACGATGATGATGatcttgatgatgatgatgatgatggaaacCTGGAGTTGGGGTCAGACAGCCCCCCCGACCTCAGCCTCAATGACCTTTGAGAGGCTTCGTCATGCCAGTGTTCTAGAATGCTATGAGTTCTTTCTTTGAGGAGTTTTTGGGCACAAACCTCAAACCCTGACTAAAGAGGATGATGAAAAGGCTGAACTCTGCTTGAGAAAAAGAAAGCACCTTATTTTAAAAACTCCTAAGTGATTATGCTCTTTTGTCTTGTGTCAGTGTTTTTTGGGAAAAGGTGTACAATAGTGTTTTGTATTACACACCAATAGTATTTAACTCAACAGTGTGGCAGCATTCTGTGATTGTCTTAATGAATTACATCTGGGGAAAGCTTTGATTTCACTGACGATATACAACTTGATGATCACTGGTGTTTTTGAGTCTAAGACCattagtaaaacatatggtggaCTGATGTTTACTTTTACTATCTAAGGCTGATGCAAATCAGTGAGGTGCTCTCTGTTATTTGGTACGGTATTTTGATCTATTTACTGTAaagtattgagatgcagcccaggcCTCTCTTCCCTCTCGCCTTTGGACCACAGACAAGTCCTGCTGTGTAACATGAGTCGGTCTGTTTAATATTTCAGCAGTTAGAGACTGTCTAGCCAGATAACCCCTCCCCGCGAAGGGGAATGGCCCATGGAGCGAGGGACCACAGATGGGCTGGGGAGAGGGGGGTTAATGGAGGGGGCAATGGGGAAGGGGTGAGATAGGGAGGGGCTTTGGCCATAGTGATGACAAGTTTTAATGTGGATGATTCAGGGCTTTCTCTTACAGTTCTATCACACACAGCCAAGTACTAGACCGCTGCTTGTTTAAATGTTACATTGACTCACTGTACGGCCTGTAAAACAAATGTGATGATTTTGGGCTTCTGCAATAAAATTCTGGATAAAGAGCTGTAATAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493002 lncRNA downstream 94 71432611 ~ 71434941 (-) True G435435
TU492945 lncRNA downstream 136360 71298465 ~ 71298675 (-) True G435386
TU492942 lncRNA downstream 140014 71294743 ~ 71295021 (-) True G435383
TU492910 lncRNA downstream 189648 71245157 ~ 71245387 (-) True G435361
TU492908 lncRNA downstream 192218 71242542 ~ 71242817 (-) True G435359
TU493076 lncRNA upstream 72723 71512841 ~ 71513192 (-) True G435496
TU493098 lncRNA upstream 75165 71515283 ~ 71516193 (-) False G435509
TU493100 lncRNA upstream 75165 71515283 ~ 71516296 (-) False G435509
TU493096 lncRNA upstream 75246 71515364 ~ 71516296 (-) True G435509
TU493101 lncRNA upstream 77505 71517623 ~ 71517854 (-) True G435510
XR_005051847.1 mRNA downstream 11526 71372725 ~ 71423509 (-) True ipo13
XM_036978289.1 mRNA downstream 11527 71371673 ~ 71423508 (-) False ipo13
XM_021604183.2 mRNA downstream 68348 71355068 ~ 71366687 (-) True pfas
XM_021604184.2 mRNA downstream 93691 71328260 ~ 71341344 (-) True hook1
XM_036978288.1 mRNA downstream 127020 71285725 ~ 71308015 (-) False il23r
XR_005051939.1 mRNA upstream 13028 71453146 ~ 71453261 (-) True LOC118964746
XM_021604200.2 mRNA upstream 92334 71532452 ~ 71542743 (-) True zyg11
XM_021604207.2 mRNA upstream 181055 71621173 ~ 71661028 (-) False angptl1a
XM_021604206.2 mRNA upstream 181055 71621173 ~ 71661464 (-) True angptl1a
XM_021604209.2 mRNA upstream 341563 71781681 ~ 71784311 (-) False faslg
TU492898 other downstream 148043 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 204446 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 366148 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 443237 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 1910245 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 600844 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 1148166 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 1176178 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 1232036 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 1334443 72774561 ~ 72775868 (-) True G436873

Expression Profile