RNA id: XM_036978292.1


Basic Information

Item Value
RNA id XM_036978292.1
length 1834
RNA type mRNA
GC content 0.46
exon number 5
gene id si:dkey-86e18.1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71817545 ~ 71827015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATTTTTAGTTACACGTTAATTATGGCTCTTTGCAGTGCTAGCAAACATTGTTAGTATTATCTAGCTAACTAGTTAGACTTCCTATCAAGTTAATTTCGCTCTGGCAAGCTTGCTACTAGCCTATAGCTAGAAACACACACTGCCTTTAGCTATCAGCGAGCTAGCCTGTTCTTAacaagctagctagttacattATATATCTGGTCCACGATGATATGTTCGATTTGAGTATTTTTCAACGCCATGCAGCATTCCATTAATCGCTCCAAAAATTATATCCCCACCGATTTGATCAATAGTGTGCCACTGCAGCCCGCAATTCGAGCATTCCTGCCTTTGGCCATCTGCAGGAATGCCCCTCCACGTCATAAATTGACAGATTGAGGGAGTTTGCTAGTAGGGGAACTAGGAAACTAGGACATTTCCAACTTGCTAATTGGTTGTAGGTAATCACGTGCTGCGTTCAACAATTAGCAAATTGGAAATGTATGAGTTTTCTAGTTCTAGCACAAGAACGTGGCATTATCTTGCCTGGCCTTGTTAGTGTCTGAAAGTTGATTACATTCGATTTAGAACCAGACTGACTCCCGGGCATGAGCCATGTGACGTAATTAAGCATGAGTGGTAATTagtaggattctgtgttttcccatgcaaaagtgattgcttttgataaaaACGCTTTATCTAGTTAAAACATTCTAACATGTATGTAGGGAAATAAGTGGAATCAGAGTATGGGCATCCGTGGCAGGGAGAAGTGTCCATCCATAATTTATACAGAGGGCCGTATCAAAGATGTTCATGAACCTAGACCCAAACTGTCAACACTCAATTCAGCCTCATCCATTAAAAAGTGGATCCCAAGCATCAAGAATGAAATCGAGTATTATCTGCAGcagtcCCAGTTGTCTCACTACCCTGAGAGGAAGATAGCAGAGTTCCAGCTGAGCATCCAGGGGCTGGAGAAAGAGTATAAACGCTTCATCTGTAAACTGCAAGCCCTGGACCCGACCTGTAAACACCAGCCCTGGTCACCTAGAGCATACACCAAGAGGagtgcagacacacacatctcCCCCAACACCGgtaattCCTGGTTTCTCTCATCTGTAGCCAAGAAACCACGCGGTCTCCAGTCATGTGATCTGAGCAGGCCGGTGGGTGGAGCACAGAGTAACTGGGTCGTTAAAAGAAGTGATGCAACCTCAGCCTCTGAGAACAAGGTACACTTCCACCAATCAGGGACTTTCCTCAGCACATTTCCAGTTGATCTGACTAATCCCAGCCCAGAGTCCACCAATCCAGATCAGGACCAGCCCCTGAACTTTGATCGCACCCGTCTGGCGGTGGTTCTAGCTGGGTCCAGAGGCCCATTACAACCAGGGTCGTCTCACACTCAGAGCCTGGCCAGGGTGCTGCTCTCTGGGCTACCCAACCTCCACAGCTCCCCACTGGGAAGGGCCATTGCTGCACAGGACAGAGACgatacagggggagagagacgagaCAGCACAGGGGCAGGAGGAGCCCATAGCACCGTTAATGATGAAAAGAGCACCGTTAATGATGAAAAGAGCACAGGGCATGTACTGGGACTAGGCTGCTACTCATCCTCAGACGATGAAGCCGACACATGACATGGCTCTGTTATTAACACTGGATCCCTGATCACTACTCAGAACTCAATCTGCCATTCATGGACATCCCATGCTTCAGTACTTGTCCAGTTTGCCCTGAACTCCAATCAGCTGTTGTGAACCACAGGTTCTTTCTTTTCCTATTGTACATTATGTAAATACACAATAAAAAGGGAAATGATACAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493464 lncRNA downstream 24647 71781699 ~ 71792898 (-) True faslg
TU493242 lncRNA downstream 76732 71730069 ~ 71740813 (-) True G435640
TU493224 lncRNA downstream 91283 71726043 ~ 71726262 (-) True G435624
TU493208 lncRNA downstream 107882 71708032 ~ 71709663 (-) True G435610
TU493201 lncRNA downstream 121005 71695821 ~ 71696540 (-) True G435608
TU493523 lncRNA upstream 44669 71871311 ~ 71871524 (-) True G435901
TU493623 lncRNA upstream 205747 72032389 ~ 72032606 (-) True G435997
TU493851 lncRNA upstream 257508 72084150 ~ 72084631 (-) True G436194
TU493858 lncRNA upstream 266075 72092717 ~ 72096564 (-) True G436199
TU493875 lncRNA upstream 297164 72123806 ~ 72126279 (-) True G436204
XR_002473593.2 mRNA downstream 24626 71781962 ~ 71792919 (-) False faslg
XM_021604209.2 mRNA downstream 33234 71781681 ~ 71784311 (-) False faslg
XM_021604206.2 mRNA downstream 156081 71621173 ~ 71661464 (-) True angptl1a
XM_021604207.2 mRNA downstream 156517 71621173 ~ 71661028 (-) False angptl1a
XM_021604200.2 mRNA downstream 274802 71532452 ~ 71542743 (-) True zyg11
XM_036976499.1 mRNA upstream 4999 71831641 ~ 71833770 (-) False jun
XM_036976500.1 mRNA upstream 4999 71831641 ~ 71833770 (-) False jun
NM_001124411.1 mRNA upstream 5000 71831642 ~ 71833747 (-) True jun
XM_036979055.1 mRNA upstream 196084 72022726 ~ 72032047 (-) True prdx6
XR_005051589.1 mRNA upstream 232929 72059571 ~ 72060414 (-) True LOC110524500
TU492898 other downstream 530553 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 586956 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 748658 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 825747 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 2292755 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 214320 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 761642 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 789654 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 845512 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 947919 72774561 ~ 72775868 (-) True G436873

Expression Profile