RNA id: XM_036976499.1


Basic Information

Item Value
RNA id XM_036976499.1
length 1997
RNA type mRNA
GC content 0.49
exon number 2
gene id jun
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71831641 ~ 71833770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCACGCTGGAAGAGTCAGTATACACACAGAGAGCTAGAAAGGCGCGCTTTGAGCAGGAATGCTGTTGAACTATAAGAACGTATAGCACTTACCGCGTCTCATTCGAAGACTGTCAAAAAACTGTGGACAGTTTGAAGAAGTTTGAAGAATTTATACAGCGTTCTGAGTCAGACTATCAGTGAAGCTGAACAGAATACTTTTTCTCGGGACAAGGAGTGCGCTTACAAATTAGAAGTGTGTGTACGGGACACGATTTTATTCCAGACTCTTGGCTCGGCTTCGGAGGTTGAAAGCATTGTCTGACACAGTATGACACTTTTCTCCGAGTTTTACAAcggaaagaacgagagagagCAGCAGAACGCGGGCTACGGATACAACCCCAAAGCTCTGAAACACAGCATGACACTGAACCTGGCTGACCCAACCATCACACTCAAACCTCACCTCCAGGCTAAAGCCAGCGATATCCTCACCTCTCCGGATGTGCAGCTCCTCAAACTTGCCTCCCCAGAGTTGGAGCGACTCATCATTCAGTCCAGCAACGGCCTGATCACCACCACACCTACCCCGACGCAGTTCCTCTGTCCGAGGAACGTGACTGATGAGCAGGAGGGCTTTGCCGAGGGGTTCGTTAGAGCTCTGGCTGAGCTCCATCATCAACACGTCTTGCCCAACGCACCTGGGGTCCCAGTCACCTCCACCGGGCAGACAAGAATCAACAACTCGACCACACTCCCACCTGTTTGCTCCGTGGCTGGGAGCACTGTTTATAACAACGTAGCCATGCGCTCTGAGTCACCTGTCTACGAAAACTTGAACACTTTCACCCCGGCTGTCACCACCAACTCAGCCCCGGGTTACACCACCTCAGTGCCGACTATGAGCTTCCCCTCTGCCCCGCCTCAGCTCCCCATCTATGGGCAGCAGTCTCACCCCCACCCCAGGCTCACAGCCCTGAAAGAGGAGCCCCAGACGGTACCTGAGATGCTCGGGGagacccctccactctctcccatCGACATGGAGAATCAGGAGAGGATCAAAGCCGAGAGGAAGCGCATGAGGAACCGCGTCGCCGCTTCCAAGTGCAGGAAGCGGAAGCTAGAGCGCATCTCCCGGTTGGAGGACAAGGTGAAGAACCTGAAGACTCAGAACTCCGACCTGGCTTCCACAGCCAACATGCTGAGGGAACAGGTAGCCCAGCTCAAACAGAAGGTGATGAACCATGTTAACAGCGGCTGTCAACTCATGCTCACGCAGCAGCTCCAGACCTTCTGAAGAGGAGATGACACTTGGGGAAGAATAGAGAGTTTGAACGAAAAGGACAGATCGTTTATAAGTGACTGGATGGCTGTTCCGTGGCTCCGTGGCATTGTGACAGGTAGAATGGGACAGTAACAGCACGAGAATGGTGGGAGGGAAccgtgactggctggctgccccTAACCGGGTGCTTCGCGCGCCACCGTTGCGCACAGGAGTTGGGGCTCCGGACAGAGCAGAGCGTGTGAAGGAAAAGAAACAGCAACAAACAGGACAAACGGATGTTTTGTTTCGTGTTGTTTTTATTGACTGGCCATTTGTTGGCGTTGACCAAGCTGTGCTTTTATGAATGGACCTTCGTGATGATTCAGTATTATAAAAAACAAAGACAGTAGATTTGAAAACTTCCTGGCGCTTAAGGAGAAGGCGTGTAGCCTAGTCTAAACAGATGAAACCGTTTAACAAAAGCTGCCTAACTTTTGAGTTACAATGTATTGTTTATTCTTAATTGTATTGAATTAAGTTAGAAAAAAGCTTAGTTACTTGTTTTTCTTCTGAAGTTGTGTAATGGGGTTCCACTCATTGTTATTAGTTGTATATAAGATTGACTTGGAGTACTTACATTTACAATTTGTAATAAGAAACAATATAATTTTGTATGTTCATTTTCTGAGCACTTCAGAAACAAATCAATATTTAAGAAATGTAATAAAACATATGTGAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493464 lncRNA downstream 38743 71781699 ~ 71792898 (-) True faslg
TU493242 lncRNA downstream 90828 71730069 ~ 71740813 (-) True G435640
TU493224 lncRNA downstream 105379 71726043 ~ 71726262 (-) True G435624
TU493208 lncRNA downstream 121978 71708032 ~ 71709663 (-) True G435610
TU493201 lncRNA downstream 135101 71695821 ~ 71696540 (-) True G435608
TU493523 lncRNA upstream 37541 71871311 ~ 71871524 (-) True G435901
TU493623 lncRNA upstream 198619 72032389 ~ 72032606 (-) True G435997
TU493851 lncRNA upstream 250380 72084150 ~ 72084631 (-) True G436194
TU493858 lncRNA upstream 258947 72092717 ~ 72096564 (-) True G436199
TU493875 lncRNA upstream 290036 72123806 ~ 72126279 (-) True G436204
XM_021604211.2 mRNA downstream 4626 71817545 ~ 71827015 (-) True si:dkey-86e18.1
XM_021604212.2 mRNA downstream 4630 71817545 ~ 71827011 (-) False si:dkey-86e18.1
XM_036978292.1 mRNA downstream 4999 71817545 ~ 71826642 (-) False si:dkey-86e18.1
XM_036978293.1 mRNA downstream 5011 71817545 ~ 71826630 (-) False si:dkey-86e18.1
XR_002473593.2 mRNA downstream 38722 71781962 ~ 71792919 (-) False faslg
XM_036979055.1 mRNA upstream 188956 72022726 ~ 72032047 (-) True prdx6
XR_005051589.1 mRNA upstream 225801 72059571 ~ 72060414 (-) True LOC110524500
LOC110522996 mRNA upstream 398394 72232164 ~ 72235211 (-) False LOC110522996
LOC118964719 mRNA upstream 438106 72271876 ~ 72272749 (-) True LOC118964719
XM_036978305.1 mRNA upstream 441688 72275458 ~ 72359867 (-) False LOC110524508
TU492898 other downstream 544649 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 601052 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 762754 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 839843 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 2306851 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 207192 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 754514 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 782526 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 838384 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 940791 72774561 ~ 72775868 (-) True G436873

Expression Profile