RNA id: XM_036979055.1


Basic Information

Item Value
RNA id XM_036979055.1
length 708
RNA type mRNA
GC content 0.50
exon number 7
gene id prdx6
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72022726 ~ 72032047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTATagTCACTGATGCTGTAAATGGCACATATGAGCCAGAGCCTATTTTATGTCTGCTATGTCTCCTGTTAGGAGACTAATTCCCCAACTTCGAAGCCGAGACAACCATCGGGAAGATCAAATTCCATGACTTCCTAGGAAACTAGATACTTCTCTCCTCCAGATGGGGAGTCCTGTTCTCCCATCCCCAGGACTTTACTCCAGTGTGTACCACAGAACTGGCCTGTGCTGCCAAGATCAGCTTTGAGTTTAAGAAACGCAACGTCAAGATGATCGCTCTGTCCATAGACAGCGTGGCTGACCATCTTGCCTGGAGCAAGgatGTGATGCCGTTTAACAGTGAGAGTGGGTGCTCTCCCCTGCCCTTCCCCATCATCGCTGATGATGAGGGAGCTCTTCAGCTGGGCATGCTGGACCCTGATGAGATTGACAAGGATGGCATGCCCCTCACCGCGCTCTGTGTGTTTGTGGTTGGTCCAGATAAGATGAAGCTGTCCATCATGTACCCGGCCACCACTGGTAGGAACTTTGACGAACTGCTTCGTGTCATCGACTCTCTGCAGCTCACTGCTCTCGAGAAGTTGGCCACACCTGTTGACTGGAAGCCTGGTCAGAAGTGTATGGTTATTCCCGCTCTTTCTGGTGCCCACTGCAAGAGTATCCACTGCTACTTATCCAGTTATTTTGTGACTTTTCATAGTTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493523 lncRNA downstream 151202 71871311 ~ 71871524 (-) True G435901
TU493464 lncRNA downstream 229828 71781699 ~ 71792898 (-) True faslg
TU493242 lncRNA downstream 281913 71730069 ~ 71740813 (-) True G435640
TU493224 lncRNA downstream 296464 71726043 ~ 71726262 (-) True G435624
TU493208 lncRNA downstream 313063 71708032 ~ 71709663 (-) True G435610
TU493623 lncRNA upstream 342 72032389 ~ 72032606 (-) True G435997
TU493851 lncRNA upstream 52103 72084150 ~ 72084631 (-) True G436194
TU493858 lncRNA upstream 60670 72092717 ~ 72096564 (-) True G436199
TU493875 lncRNA upstream 91759 72123806 ~ 72126279 (-) True G436204
TU493905 lncRNA upstream 141655 72173702 ~ 72174022 (-) True G436230
XM_036976499.1 mRNA downstream 188956 71831641 ~ 71833770 (-) False jun
XM_036976500.1 mRNA downstream 188956 71831641 ~ 71833770 (-) False jun
NM_001124411.1 mRNA downstream 188979 71831642 ~ 71833747 (-) True jun
XM_021604211.2 mRNA downstream 195711 71817545 ~ 71827015 (-) True si:dkey-86e18.1
XM_021604212.2 mRNA downstream 195715 71817545 ~ 71827011 (-) False si:dkey-86e18.1
XR_005051589.1 mRNA upstream 27524 72059571 ~ 72060414 (-) True LOC110524500
LOC110522996 mRNA upstream 200117 72232164 ~ 72235211 (-) False LOC110522996
LOC118964719 mRNA upstream 239829 72271876 ~ 72272749 (-) True LOC118964719
XM_036978305.1 mRNA upstream 243411 72275458 ~ 72359867 (-) False LOC110524508
XM_036978306.1 mRNA upstream 243411 72275458 ~ 72359868 (-) False LOC110524508
TU492898 other downstream 735734 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 792137 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 953839 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 1030928 70990892 ~ 70991798 (-) True G435234
TU491077 other downstream 2497936 69522814 ~ 69524790 (-) True G433683
TU493828 other upstream 8915 72040962 ~ 72121697 (-) True G436172
TU494572 other upstream 556237 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 584249 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 640107 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 742514 72774561 ~ 72775868 (-) True G436873

Expression Profile