RNA id: LOC110522996


Basic Information

Item Value
RNA id LOC110522996
length 879
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110522996
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72232164 ~ 72235211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGCGGAGATCCTAGTCTAATGCTGATTTGCTGAGATTCTTGACAGAAGCCTGTCATTGTCTGACGTAGAATCGGATGCCTTTGCGGCCCGGCGAGTTCTGGTCCGTTGGTGATTATCTTCCGGACAACAAGAGGAATCAACATGGCTGTCCCAACCGGGAGATCTGTGGTCTTCGTGACTGGAAACGCAAATAAACTAGAAGAGGGGATTCAGATCCTGGGGGACAAGTTTCCCTACAAACTAGTGGACTGTGAGTACACCTTATCAATGGTTCCTGAATAAACTGAAGCCAGAAGGTCAGTTTAAGATGCTGGCTGGGTTTGAGGACAAGTCGGCCTGGGCTTTGTGTACCTTTGCCTTCTGTCCAGGGAAAGAGGAACCGGTACAACTCTTCAGAGGGATAACTGAGGTaagaatatcacacacacacacaccacactgaacatCTCTGCATGCTTGctctaatatacagtaccaTTATGCTGAGCTACCCAAGGAGGTGAAGAACACCATTTCCCATCGGTATCAAGCTCTGGCAGCCATGTCTGAACACTTCTCCTTTCAGGACAATGGCACACCAGACAGCAAGAAGAAGAAATGGCTATTAACCCCTGATCTAGCATCAGATCACATAACCATTAGAGGGATACAAaatctgaccctgtatcagtggtGGGGCAACTTCTACCTACTCTGACTTATGGGTATCAGAGTCTGAGCCAATCAAACAGTTCTGATGTTGAATTTAGATAGTGGTGCttttgatacagtgccttcaaaaagtattcacaccccttgactttttccacagtttgaTGTGTTACACATGGGATTAAAATTGAAAAAGaattgtcaacgatctacacaaaatactcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493960 lncRNA downstream 12873 72219054 ~ 72219291 (-) True G436272
TU493959 lncRNA downstream 13404 72218531 ~ 72218760 (-) True G436271
TU493958 lncRNA downstream 15067 72216897 ~ 72217097 (-) True G436270
TU493916 lncRNA downstream 15779 72212395 ~ 72216385 (-) True G436240
TU493923 lncRNA downstream 19827 72211741 ~ 72212337 (-) True G436242
TU493975 lncRNA upstream 30379 72265590 ~ 72266584 (-) True G436286
TU493943 lncRNA upstream 40320 72275531 ~ 72315437 (-) True LOC110524508
TU493991 lncRNA upstream 75471 72310682 ~ 72310987 (-) True G436300
TU494027 lncRNA upstream 160503 72395714 ~ 72396482 (-) True G436336
TU494028 lncRNA upstream 161318 72396529 ~ 72396782 (-) True G436337
XR_005051589.1 mRNA downstream 171750 72059571 ~ 72060414 (-) True LOC110524500
XM_036979055.1 mRNA downstream 200117 72022726 ~ 72032047 (-) True prdx6
XM_036976499.1 mRNA downstream 398394 71831641 ~ 71833770 (-) False jun
XM_036976500.1 mRNA downstream 398394 71831641 ~ 71833770 (-) False jun
NM_001124411.1 mRNA downstream 398417 71831642 ~ 71833747 (-) True jun
LOC118964719 mRNA upstream 36665 72271876 ~ 72272749 (-) True LOC118964719
XM_036978305.1 mRNA upstream 40247 72275458 ~ 72359867 (-) False LOC110524508
XM_036978306.1 mRNA upstream 40247 72275458 ~ 72359868 (-) False LOC110524508
XM_036978307.1 mRNA upstream 40247 72275458 ~ 72359868 (-) False LOC110524508
XM_036978309.1 mRNA upstream 43280 72278491 ~ 72359870 (-) False LOC110524508
TU493828 other downstream 110467 72040962 ~ 72121697 (-) True G436172
TU492898 other downstream 945172 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 1001575 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 1163277 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 1240366 70990892 ~ 70991798 (-) True G435234
TU494572 other upstream 353073 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 381085 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 436943 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 539350 72774561 ~ 72775868 (-) True G436873
TU494824 other upstream 859583 73094794 ~ 73095336 (-) True G437054

Expression Profile