RNA id: XM_036978310.1


Basic Information

Item Value
RNA id XM_036978310.1
length 3355
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110524509
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72377782 ~ 72393450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACTGTATCACACTCCCACCACTTGGTGTCGATGAATCCTGTCATTGTTGTGAATGAGTACACTTAGCCCGTTGTTTGAAATTTGTCTGTAGCCAACATGGCGGACGACCTGGACGTTGATATCGAAGGAGACGAATATGATGCTAAATTGGGTGGCTTTGGTGAGGGAGCAGCGCTACTCCAGAACCAGCACCCGCAGTCAGCATGGAAGAACAATACTGGAGTCTTGccATGGGGACTAGACAGCTCCATCAGTGCAGAGAACATGCTGCTGGAGGAACAGTATTATTTGACAGGTAAAGAGACGTCCAAGAGTGTGTGGGCCAACTCGGCTAACTGCAAGCCTAAACCCAAAGTGAAGAAGTCTCCTGCCAAGCCTTCAGGTTCAGGCTCCTCCACAGCCACTCGCTGGTCACAGCAGGAGAAGGAGCTGTTTGAGACAGGACTGGCTCAGTTTGGCCGTAGGTGGACTAAGATCTCCAAGCTGGTAGGCAGTCGGACCATTCTACAGGTGAAGAGCTACGCCAGACAGTACTTCAAACACAAGGCTAAATCAGAGTGCAATACTACTGCAGTGGCAACCCCTACAGCCCCCCTGGTTTTAGGCCAGGTCCCAGAGGCAGGGTCAACAGTGTTCACCTCTggcctgtctgtccccacccaccTGTCAGCTCTGACCAACACTGTCCGgatagagagactgggagacgaagaggaagaggaggtggacaTAACTGATGACTTCAGCGATGAGGGAAGTAGTGGAGGAGGAAATGGAGGAGAAAGAAATATTGAGGGGAATGTTGAGGACCTCCAGGCTGGAGTTAGGACTGAGACACATGAGCCTGGAGTGCCAGAGGAGCTGGACAACCATGGAGAGATCCACCAGGTGCAACTCAACCAGACACACCCCAGGCTGGAAGAGACGGATCAGGAGCAGCCTAACTGtagccctccatctcccctcacaGCTCCATGCCCAGCAGAGCAGGCCCCCAGCGGACAGTGTGAGGGGGGAACTGCTGAGCCCCTGAGGGACCCAGTGGAGtctggagaggagacaggggggtCTGGGTGGCAAGAGGCAGGGGAGGAGTTTGAAGAGGAGGAGCTTACAGCCCCCGAGCAGGAAGCGGAGCTGGACCTGGCGACTATCACTGAGGAGGAGAAACGAGCTATCCCAGAATTCTTTGAGGGACGGCCATCCAAAACCCCAGAGAGATACCTGAAGATCAGGAACTACATGCTGGAccaatggTTGAAGAGTAAGCCCAAGTACTTGAACAAGACGTCAGTGCGTCCTGGTCTGAAGAACTGTGGAGATGTCAACTGTATCGGCAGAATACACACCTACCTGGAGCTGATAGGAGGCATCAACTTCAACTGTGATCAGGCAGTGTATAACCGTCCCAGGGTGGTGGATCGTTCTAAACCCAGAGAGAGCCGAGACACTCTGGAATACCAGCTGGCCCAAAGACTACAGAGCATGCGAACCAGGAAGCGTCGTGTGAGGGACGTGTGGGGGAACTGGCGTGACGCTAAAGACCTGGAGGGACAGACATACGAGCACCTGAGTGCAGAGGAGCTAGccctgaggagagagatgagaccgCATAAACCCTGTAAGGTCTCCAGGCACAGAGGGTTGCTGGATCCGTTCCAGCTGATTCCGTGTCGTGTGTTTGGAAAGGAAAGGCAGGAGCCCTTTCAGGTGATAGTGTGTGCCGAGGCTCTCCTCATCATGGACATGCATGCCCATGTGTCGATGGGTGAAGTCATCGGGCTACTGGGAGGATCCTACAGCGAGGAAGACAACGTCCTGAAGATTGTTGCAGCGGAGCCATGTAACAGTGTGAGTACAGGTCTGCAGTGTGAGATGGACCCTTTGTCTCAGACTCAGGCCTGTGAGCTGTTGTCTAGCCTGGGCTTGGCTGTAGTGGGATGGTACCACTCTCACCCCACCTTCCACCCAAACCCCTCTATACgggatatacacacacaggaccagttccaggtacgtgtgtgtgtgtgtgtgtgtgagagagagagaaactgtgttctgaccctctctttctctcagagtTATTTCTCTCGAGGCGGAGCCCCGTTTATTGGGATGATTGTGAGTCCGTTTGACCCTGCTAACCCCTCCCCCCGCTCCCAAACCACCTGCCTGATGGTCAGAGAGGACCAAGGACCAGGACCACAGAAGCTGCCCTACAGGTTTGACTACCAGTGTTCACAGCAGCAGCCTGACTGGAGCCAGCTGATGAGGAGGGCAGAGTGGATTATCCACAAGTATAAACACGCCCACGGCAGTGTCCAGATGGACAGGCCGTTCCGCAGGGACTCTCATCTCACCTGTCTGGAGAAGaTGATGTCATCTTTGGGGAGGTATCTGGAGCCCCTgctagaggaggagggagaccacTTCCTCTCCCAGATCCACACTCTGTTCCTGTCACACTTTGTTGCTGAGAAACCAAGAGGCAAGGATGGGGGCGAAACCGCTGACTCCTCAGATCCAATCAACACCCATGCCTTCCCCTTCACTCAGCCAATCAACATCAGAGGAACAGATGACACAGGAACAAAGGAAAACTGGGAGAATGAATCGGTCTCGCCCATTGATAGTATAGAAACGCCTAATATAGAAACCACTAACTCGCACACAGCTAACCAAGAGAACTTACATCCAATGCAGTTTGGTTCTGTGTTGTTAACTGGTCATGATTATCTATTCTGAATCTACTAGATGTCTCTATATATCCAGTTTGTaatgcagttgaaacaataacaaagtctTTTCCCTGCCCCTATTTCGGTAAAAAGCTggaggatggggctggagatCAGTAACCCCTCACAGACAGctatagatgcaaggactgaccatccatgatataaaaaTGTTTCAACCATGTTTTGgagctatatagtgtttgtttaaaaACATTGTAGTAAAACAAgtgtatattttgggttctgatgggataCAACagttcaagaatcaatgggtacatataaaTCATTTATCGTTCCAAAAATGAATGAACCTCCAGATTGCCCTTTTAAccccttgtgtggtgttcatgtttttgttattcacccaatgttcaccggtctgatggacccacaacattaCTGGGTTTTTAAAACAATTCAGCCATAACAATTTATGTAAAAAATACTTACTACTTAGATGTTGACTTAAATCAATTACAAgcaatatagacagcatacatggttaatatagacagcatacatggttaatatagacagcatacatggttaatatttgccatttacctctgctagatcacatttatcaataaaagTTTTTTTTACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493748 lncRNA upstream 227 72377147 ~ 72377556 (+) True LOC110524510
TU493780 lncRNA upstream 7788 72369598 ~ 72369995 (+) True G436131
TU493713 lncRNA upstream 79314 72296246 ~ 72298469 (+) True G436069
TU493693 lncRNA upstream 92526 72284643 ~ 72285257 (+) True G436051
TU493702 lncRNA upstream 93314 72280194 ~ 72284469 (+) True G436059
TU493807 lncRNA downstream 33935 72427385 ~ 72429970 (+) True G436155
TU493821 lncRNA downstream 63252 72456702 ~ 72457021 (+) True G436168
TU494060 lncRNA downstream 69631 72463081 ~ 72463317 (+) True G436368
TU494064 lncRNA downstream 73766 72467216 ~ 72467416 (+) True G436372
TU494067 lncRNA downstream 77465 72470915 ~ 72471118 (+) True G436375
XM_021604235.2 mRNA upstream 201 72362852 ~ 72377582 (+) False LOC110524510
XM_036978302.1 mRNA upstream 107917 72239918 ~ 72269866 (+) False LOC110524507
XM_036978303.1 mRNA upstream 107917 72239918 ~ 72269866 (+) False LOC110524507
XM_036978304.1 mRNA upstream 107917 72239918 ~ 72269866 (+) True LOC110524507
XM_021604225.2 mRNA upstream 138269 72235213 ~ 72239514 (+) True mettl13
XM_036978314.1 mRNA downstream 79667 72473117 ~ 72830580 (+) False LOC110524511
XM_036978313.1 mRNA downstream 337211 72730661 ~ 72830580 (+) False LOC110524511
XM_036978316.1 mRNA downstream 337211 72730661 ~ 72830580 (+) False LOC110524511
XM_036978315.1 mRNA downstream 337213 72730663 ~ 72830580 (+) False LOC110524511
XM_036978317.1 mRNA downstream 337213 72730663 ~ 72830580 (+) True LOC110524511
TU492480 other upstream 690614 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1078883 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1154205 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1417851 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 4163679 68212716 ~ 68214104 (+) True LOC110524423
TU494101 other downstream 110010 72503460 ~ 72504435 (+) True G436403
TU494306 other downstream 602049 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 1062851 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 2369754 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 2378559 74772009 ~ 74776469 (+) True G438719

Expression Profile