RNA id: LOC110524512



Basic Information


Item Value
RNA id LOC110524512
length 1265
RNA type mRNA
GC content 0.31
exon number 1
gene id LOC110524512
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72829316 ~ 72830580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATCTGTTTTATTAACATCCATGTTTATCAACATCCATGTTTATCAATATCTGTTTTATCAAAATCCATGTTTATCAATATCTGTTTTATCAACATCCATGTTTATCAATATCTGTTTTATCAACATCCATGTTTATCAATATCTGTTTTATTAACATCCATGTTTATCAACATCCATGTTTATCAATATATGTTTTATTAACATCCATGTTTATCAACATCCATGTTTATCAATATCTGTGTTATTAACATCCATGTTTATCAACATCCATGTTTATCCATATCTGTTTTATCAAAATCCATGTTTATCAATATCTGTTTTATCAAAATCCATGTTTATCAACATCCATGTTTATCAATATCTGTTTTATCAACATCCATGTTTATCAACACCCATGTTTATCAATATCTGTTTTATCAAAATCCATGTTTATCAATATCCATGTTTATCAATATCTGTTTTTATCAACATCCATGTTTATCAACATCCATGTTTATCAATATCCTTGTTTATCAATATCTGTTTTTATCAACATCCATGTTTATCAACATCCATGTTTATCAATATCTGTTTTTATCAACATCCATGTTTATCAACATCCATGTTTATCAATATTTGTTTTTATCAAAATCCATGTTTATCAATATCTGTTTTAGCAGAATCCATGTTTACCAATATCCATGTTTATCTATATCTGTTTTAGCAGAATCCATGTTTATCAATATCCATGTGCCAATAACACGTTTCCACTGATGTACCCTGTAACCTCTTACAGTCATACTatcaccacctccatgcttcatatCATCCCTCAGTCTGAGTGATAGGACCCTTACCCATCatcacaaccacaccagacactCATAGCTGGCTGTCATCGAcccctaacctgtctgtctgtgctacTGCTAGTACTACATCAACTCTGATGCCAGTGACTCCCTATTTTATGGCCAAAGTCTATGCGTAATTAGACTCATCTGGACTGACAACTTGAATAACTGTTTGGACAATAGAaaaagacgaagaagaagaagatgaggaaGTGGAGTAAAAGGGAAACATGCTGTTTGATTACATAATATTTCTAGACATATTTTATGCTTACCGCAGATAACGTTTTCTTAATGTAAATTGACACATTATTTTTATCTTGATGAATACGATAGCATTCTACTGTGGATTTTTAGAATACTTATTTATTTTCTGTTGATTTACGTCTCCACCATGTAATAATGTTACTATTAAACACATCCCAATGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494173 lncRNA upstream 80815 72746163 ~ 72748501 (+) True G436473
TU494162 lncRNA upstream 126866 72701870 ~ 72702450 (+) True G436462
TU494161 lncRNA upstream 138250 72690824 ~ 72691066 (+) True G436461
TU494160 lncRNA upstream 140060 72688566 ~ 72689256 (+) True G436460
TU494159 lncRNA upstream 152613 72676471 ~ 72676703 (+) True G436459
TU494225 lncRNA downstream 28226 72858806 ~ 72861016 (+) True G436516
TU494310 lncRNA downstream 167608 72998188 ~ 72998413 (+) True G436592
TU494313 lncRNA downstream 170198 73000778 ~ 73000997 (+) True G436595
TU494329 lncRNA downstream 225320 73055900 ~ 73056733 (+) True G436606
TU494335 lncRNA downstream 234920 73065500 ~ 73065729 (+) True G436610
XR_005051848.1 mRNA upstream 435866 72377782 ~ 72393450 (+) False LOC110524509
XM_036978321.1 mRNA downstream 3317 72833897 ~ 72850711 (+) False LOC110524513
XR_005051849.1 mRNA downstream 3317 72833897 ~ 72851137 (+) False LOC110524513
XR_005051850.1 mRNA downstream 3317 72833897 ~ 72851137 (+) False LOC110524513
XR_005051853.1 mRNA downstream 3318 72833898 ~ 72848192 (+) False LOC110524513
XR_005051851.1 mRNA downstream 3318 72833898 ~ 72850039 (+) False LOC110524513
TU494101 other upstream 324881 72503460 ~ 72504435 (+) True G436403
TU492480 other upstream 1142147 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1530416 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1605738 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1869384 70959610 ~ 70959932 (+) True G434653
TU494306 other downstream 164919 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 625721 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 1932624 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 1941429 74772009 ~ 74776469 (+) True G438719
TU497242 other downstream 2340724 75171304 ~ 75178287 (+) True LOC110524571

Expression Profile