RNA id: XR_005051850.1


Basic Information

Item Value
RNA id XR_005051850.1
length 3966
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110524513
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72833897 ~ 72851314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggggtaagcatctggaggttgaatgtttgaaggggtacgggactataacaagtttgggaaccaccaGTCTAGAATATTTAATATAGCTTTAGACAACATGGTTCTAGGGCCAAATATTCTGTATCACTGCCATATTAATAGGCACACACAATAGCATGTAGACTATCACATCTGTAATTAGGCAACATGGTTCTGTTTGCCCAACATGTGTCATATGAGCAAAGTGTATAGCCTGCCGTGGTAAAGGAGGGGGGAACAAGTTTAATGAGCATTTCATTGTGATTTGTCAACAATCGCGCTTCTATGGCACCAGCTGCGAGTAATGACACGCACGCACACCTGTCAGGCAGCATTCCTTTTTGATGAAAGCTGTCAGAAAGTTCATCATGCACGTTGCGTTGAAATGCCTTGCGCTCTCGACATACACCACGATACCCGCTGGCTGACTGACCCGTTTAGCTGGACGGACCGTTTCTGCGATGTGAGCGTGAATAATtatatgagagcgagagagataattCCACCTGACTCTCTTCCGAGACCGTCCACCCCTGAAGCTAAGGAAGACATCCTGAGAGAGTGTAAAGCCAGAATAAGAGGCAGAAGCTGACACCTGGAGAAATACAAGAGCGGCAGAACAAGGCTACCCATAGCTGTCTCTCTGCCTGGTGGAATTACGCACGATGGACCAGGAAGAAGACTTTCTGGACTTCAAGTCCTTGAGGGCAAAGTTCCAGGATGAGGAAGTGTTGCTGCTGAAGCAGCCCGGGACCAAATCTGCTCTCCCTGAGAAACCTAAAGTCCTGCCTCCTCCTCAAAGCCCTACAAACTGCCTTCCTACCCTCAACTCCACATCACATACACCCTCCAACTCGCACTTCCTACCGCGCGGTGCTCgaccttccctcctctcctcccttcaggGGCCGGGTGGCATCGCATCCAGAGTCGtcaaggaggagaagaaggtgaAGAGCAAAGACAAGGATGAGGGGAAGGTGAAATTACTAGGGAAAAATAAGGCAGAGGTGAAGGCTGATAAAGAGAAGTCGGATGAAAGGATGAATGGAGGGAAAGATATTGTAGAAGTAGTGGTGAGGTCAGATCTGCTGGACCAGAAACAGAAGAAAGAAGCAGACCTGGCCATGAAGAACAAGAAGGTGTCCCTGCTGTCCCCTGGGGGGTCTAAGGGGGGTAGTGTTGAGCTGGTAGACATGTCACCACCACCCATAAACACAACAAAGAAGAAGGGTTTTCTGGGCATCGGGAAGTCAGTGAAAACAGGGaagaagaggaaagaggggagagttGAGCTTCTTCCTTTCCCCATACTGGACATAGCCAGCCCAGACCTGGCTGACCCTGAACCTCTCATGCCTCTAACCACCTTCGGAACCCCAGCCCCCCTTGGTGATATACCTATACGTACCGTCATTATCCCACCTTCCCCAGCAGTACACAATGTTCACTTACCCTCTGCCTCGATACCTGCCCCAGTACTAGATTCCCCCTTACCCCTGGAGCTGACTCATAACCCAGTATTTACCCTGTTACCCCCCACCCTGAAACCTGCACCAGCAGCTGAAGCCATTACAGTCGTTACACCACCTAACCCCATCCCAGTGATCCCTGACCCTCCTATCATTGATCACATTCCTGAAACCCTCAGTCTTAAACCCTCAGCTGAAACCATCCCAGCCCCCACCCTGCCAGTATCAGTCCGCCCTACCCCTTCCCCTGTTACTGCCCCATTCAGCCCAATACCAGCTCCCCCAGTCACCCATATACTCCCTGCtgtcccctccccacctacaatctctacctccaccccaccTCCACCTGTTATTGCCACTCCATCCCCACCCCCTGACcctaccccctctcctcctcctcctccccctacaCCTCCAGCTGCTGAACTTGACCCTGAGTCTGTAGTAGTGGATATTGCTGTTATAGTCAAGACCTCTGCCTCTCGACTTCCCTCTcacaccccccctcccccggCTGGTGACCCCTCAGTCGCACCCCCGTCCCTCCAGCCTGAGAGGCCCGTGGGAGTCCAGGAACGGCCACTCTCGGCCCTGTTGGCTCTAGGACGAGCAGAAGAGATgagtccaccaaaaaaaagaggatCAGAGATAATCTTCAATGCGCTGGAGAAAGCTAAGAGGACGCTCACCAGCCCTCTTATGACCCCCATCCCCTCCAGACCTATCACACCCACCATAGAGGACCTAACCCCACCCCCCCACAGTCCTAGCCCCACCCCGGTGAAATCGCTACCTGAGCTCCCACCAATCGACTACGATGACCAGGCAGGGGCGGCGGCCCCTACAACCCTGATACCGGCCCTAGTCAAAGGTATTGACATTAggCAGGCGCCTCCTATGTTGGAGGGGATAGCAGAGAAGGGTGCAAGGGACCTCCTACCAGACCTGTTTGTGGTGCCCCCTCCTCCCCCAAGAAAGTGCCTCCCAGAGGCCTCCACCCGAGGATCCCCGCCAGAGAAACCCCCCCAACTCCCCTCCGTGGACCTTACTGCCTATGCTGTGGAGATTCCTGTTCCTTCAGCTGATTCTGCTCTCAACATTCCTGAGTTTGAGGATGTAGGATCAGATGTTCTGGAATTGGAAGCCCCGGAGTTCCAGCCTGCAGACTTAGTGGAATTAGGGGTGTCTAAGTGGGGAGCCCAGGCAGAAGACAGCACCAATGAGAGCTGTGGCAATGCCTATGAGGACATGCCCTCAGCCAAGCAGAAGGTCAAGGGTCAACCTACCAAGAAAAAGAAAGGAACAGCGAAGAGTAAGACACAGGCGCCTTACAACCCATATGCTGAGACTCAGCTTCCGacagaagaAACACCCAAGACTGACTTGTTCTTGAAGAAGACTGCCTCGGAAACCCCAGATGAGAAACAaatgaaaaagaaagaaaaacaaagtttggagaaggagaagaaagaacagaaagaaagagagaggaaagagcagaaagagagagagaagaaagaaaatgAGATGAAGAAGTTTAAGataacaggtcagaaggaGGCTATATACCAGGCTACAGTGATGGTAGCGTCTAAAGGACATAAGAACGACCTGGCTGTGAAGAACGGGGACATAGTCAGCATCATACGGACCACAAACTGCCCGAAAGGAAAATGGCTGGCCAGGAACAGCACTAATACATatGGATACATCTCAGTGAGCGACGTGGATCTGGACATTAAGGAGATGTTGGAAATGGGGAAGAGGGCTTCTCGAGCCATCAGCTGTAAAAACATTACCACTATGGTAGAACAGGGAGGAGGCGAGGTGGCCAGTATGGACAGCAGGACACCCAATCACTACCCATTTCAGGAAGATACAGGCAGCTTCACAGACGACAGTGAGGAGTGggcacatgatgatgatgatgatgaacctctctcctccctcatcgaGGAAGACCCCGCAGAGAGAGACCACATCCAAACAATGTCCATGCCAGAGATGGgaagcagagagtctagCATCCACAACCAACACCTAGTCAGTGACGCCAGCATGGATGGCATTGACATGCAGGTGAGACATGAAGCACTTCAGAAGCTGGCCACTTTCTTCCACAAACCAGTTGTAGAGGATCCCATCATGAGGCCCTATGGACATAGGAGGACAAGAGACGGTGTACCTGTTTAAAGAGGAGGCAGATATGGTGGTTCTTCCTCCTCCTGACCTGTATGCAGACATCATCAGTGACGCTTAGTAGACTACAAACTACCTACAGCTGGTGAACACAGGAAGAACGGCAAGATGTCTGTCATCGCCATGACAATCACTCAGATGACGGAGGCTTGTAGAATCTGTCTGGACAACCTGCAATCGGATGGACTATTTCTGTTATTGtttaggctgggattcaatctgAGCACTCTAGTCGACAATGCAGCCTTTTAAGGTAACCGTGTTCAGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494173 lncRNA upstream 85396 72746163 ~ 72748501 (+) True G436473
TU494162 lncRNA upstream 131447 72701870 ~ 72702450 (+) True G436462
TU494161 lncRNA upstream 142831 72690824 ~ 72691066 (+) True G436461
TU494160 lncRNA upstream 144641 72688566 ~ 72689256 (+) True G436460
TU494159 lncRNA upstream 157194 72676471 ~ 72676703 (+) True G436459
TU494225 lncRNA downstream 7669 72858806 ~ 72861016 (+) True G436516
TU494310 lncRNA downstream 147051 72998188 ~ 72998413 (+) True G436592
TU494313 lncRNA downstream 149641 73000778 ~ 73000997 (+) True G436595
TU494329 lncRNA downstream 204763 73055900 ~ 73056733 (+) True G436606
TU494335 lncRNA downstream 214363 73065500 ~ 73065729 (+) True G436610
XM_036978313.1 mRNA upstream 3317 72730661 ~ 72830580 (+) False LOC110524511
XM_036978327.1 mRNA downstream 24048 72875185 ~ 72916702 (+) False LOC110524516
XM_036978326.1 mRNA downstream 24057 72875194 ~ 72918731 (+) True LOC110524516
XM_036978330.1 mRNA downstream 156720 73007857 ~ 73052550 (+) False LOC110524519
XM_036978328.1 mRNA downstream 156722 73007859 ~ 73052550 (+) False LOC110524519
XM_036978329.1 mRNA downstream 156722 73007859 ~ 73052550 (+) False LOC110524519
TU494101 other upstream 329462 72503460 ~ 72504435 (+) True G436403
TU492480 other upstream 1146728 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 1534997 71298615 ~ 71298900 (+) True G434829
TU492265 other upstream 1610319 71218789 ~ 71223578 (+) True G434792
TU492109 other upstream 1873965 70959610 ~ 70959932 (+) True G434653
TU494306 other downstream 144362 72995499 ~ 72995735 (+) True G436588
TU495122 other downstream 605164 73456301 ~ 73495084 (+) True G437327
TU496738 other downstream 1912067 74763204 ~ 74770166 (+) True LOC110524560
TU496740 other downstream 1920872 74772009 ~ 74776469 (+) True G438719
TU497242 other downstream 2320167 75171304 ~ 75178287 (+) True LOC110524571

Expression Profile