RNA id: XM_036978325.1


Basic Information

Item Value
RNA id XM_036978325.1
length 873
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110524515
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72852068 ~ 72866268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTGTCCAGTGTCCCGCGGACACACCTCCCCCGCACGTCGCGCTCGGCAGCCAGCGCACAGAGCAGAGAGCTCAAGCCTACCGGAGCCGTTTAAAGATGGCAGAACGACAGCAGAAACACGAAGGCGGCCGAGTGAAGATCGGACATTATCTTCTCGGAGACACTCTGGGCGTCGGCACCTTCGGCAAAGTAAAGATTGGAGAGCACCAGTTGACAGGTCATAAGGTGGCAGTGAAGATCCTGAACAGACAGAAAATCAGGAGTCTGGACGTGGTGGGCAAGATCAAACGAGAAATACAGAACCTCAAACTATTCAGACACCCTCATATCATCAAACTgtaccaGGTGATCAGTACGCCTACAGATTTCTTCATGGTGATGGAGTATGTTTCAGGAGGAGAGCTGTTTGACTACATCTGCAAACACGGACGGGTAGAAGACAAAGAGGCTCGTCGGTTGTTCCAACAGATCATCTCAGGGGTAGACTACTGCCACAGACACATGGTGGTGCACAGAGACCTCAAACCTGAGAATGTTCTGCTGGACCATTCCAAGAACGCCAAGATAGCTGATTTTGGGTTGTCAAACATGATGTCAGATGGGGAGTTCCTGAGGACCAGCTGTGGATCTCCCAACTACGCTGCTCCTGAAGTCATCTCTGGAagGTTATATGCTGGCCCTGAAGTGGATATATGGAGCTGTGGTGTGATCCTGTATGCGTTGCTTTGGTAACAGGTTATATGCTGGCCCTGAAGTGGATATATGGAGCTGTGGTGTGATCCTGTATGCGTTGCTGTGTGGGACTCTACCCTTTGATGACGAACATGTTCCCACGCTGTTTAAGAAGATCAGAGGGGGCGTGTTCTATATG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494649 lncRNA downstream 25488 72829457 ~ 72830566 (-) True G436904
TU494648 lncRNA downstream 27449 72826445 ~ 72828605 (-) True G436903
TU494599 lncRNA downstream 109781 72741269 ~ 72746273 (-) True G436856
TU494600 lncRNA downstream 111499 72741760 ~ 72744555 (-) True G436857
TU494598 lncRNA downstream 112307 72741269 ~ 72743747 (-) False G436856
TU494673 lncRNA upstream 5714 72871982 ~ 72872221 (-) True G436927
TU494785 lncRNA upstream 168635 73034903 ~ 73035154 (-) True G437022
TU494782 lncRNA upstream 169643 73035911 ~ 73036747 (-) False G437020
TU494783 lncRNA upstream 169643 73035911 ~ 73038795 (-) True G437020
TU494788 lncRNA upstream 174275 73040543 ~ 73041059 (-) True G437024
XM_036978308.1 mRNA downstream 496183 72279402 ~ 72359871 (-) False LOC110524508
XM_036978309.1 mRNA downstream 496184 72278491 ~ 72359870 (-) False LOC110524508
XM_036978306.1 mRNA downstream 496186 72275458 ~ 72359868 (-) False LOC110524508
XM_036978307.1 mRNA downstream 496186 72275458 ~ 72359868 (-) False LOC110524508
XM_036978305.1 mRNA downstream 496187 72275458 ~ 72359867 (-) False LOC110524508
XM_021604242.2 mRNA upstream 138987 73005255 ~ 73010401 (-) False LOC110524517
XM_021604243.2 mRNA upstream 138987 73005255 ~ 73010401 (-) False LOC110524517
XM_021604244.2 mRNA upstream 138987 73005255 ~ 73010401 (-) False LOC110524517
XM_021604245.2 mRNA upstream 138987 73005255 ~ 73010401 (-) True LOC110524517
XM_021604246.2 mRNA upstream 187576 73053844 ~ 73062414 (-) False LOC110524518
TU494616 other downstream 80186 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 183228 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 239110 72616296 ~ 72616944 (-) True G436842
TU494572 other downstream 267478 72588284 ~ 72588576 (-) True G436830
TU493828 other downstream 734357 72040962 ~ 72121697 (-) True G436172
TU494824 other upstream 228526 73094794 ~ 73095336 (-) True G437054
TU494844 other upstream 255844 73122112 ~ 73125038 (-) True G437074
TU494857 other upstream 280090 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 280090 73146358 ~ 73147128 (-) False G437079
TU494859 other upstream 280090 73146358 ~ 73147128 (-) True G437079

Expression Profile