RNA id: XM_021604243.2


Basic Information

Item Value
RNA id XM_021604243.2
length 1357
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110524517
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73005255 ~ 73010401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacccagagcctaacgttagcttctgggaggatgtcatgtcattggaggagtggtagatgCAAAATGGCGGCCACGGGAGAGGAGGCTGCTGAGATGGACTGCATCTCAAGAGTTTCCTTGGCCCATCCCACCGCCCTCAGCCTGGGAGGGAGCTCAGAACCCCGGGGAGAGCCTGGCGAGACTGCCTCTGAGGGCCAGGAGGTTGTGACTACGGCGCCCAAGAAGCCCACCAACAGCAGTGACGGTGGGGTGGAGACTGCAGAGGAGGCCGTAGAGCCAGCAGAGCCAGACATCAATGAACTCTGTACAGACATGTTCGATAAGATGGCTGTCTTCCTACAAGGAGAACTCACTGGCACCTGTGAGGACTACCATCTACTGGAGAACATGAACAAGCTGACAAGTCTGAAGTACATGGAGATGAAAGACATCAGCATCAACATCAGCAGGAACCTGCAGGACCTCAACCATAAGTACGCCAGTCTGCAGCCCTACTTAGACCAGATAAATCAAATAGAGGAACAAGTGTCTTCTCTGGAGCAGGCTGCTTACAAACTGGACACCTACTCCAAGAAgctgggtaacacacacacacggctgtggAGAGACAGGCCATATCGTCATATTGCAGaGGCCAAGTTCAAAAAACTGGAGAAGCGATGAGGATTATGGAAGGAGGAATAGGGGTACTGGTCCTCCTTCACCCAAGCTGTAGACCAAACCTAACATATACGATCTGAGGAAGCAGACCCACACCTCTACATCAGCCTGATATAGAGAGGAATGGGGCAGCCTGGGGTTGGTCGGAGGAATATCCCAGATGTTACACCTAGCATTATCATTTTGGTTGGATCATTTAAGTTGCATCTTAATACCAGGTGTAGATGGCGCTTTGGGTAGTTTGTGTCCATATTCCTGTTAACATTCCAGGTCACTCTGTCAGTCCTGTCAAAATTGCTATTCACTTCCTGGATTTACTGAGTTTATCCTGAATTGTCCCCTGCTGGGTGCACACTACTGTAGAATCACCACCCTCCTAACCTAGAAGTTAGTTACACAGATGACAACCAAATTCACTTTGACTGAAGGACATTAGCTTCTTTAAATGTTTTCCTGTGCTGCTGGCATCACTGAATTAACATGACAAAATTACCTTTATGTTTTGTGTGAATACTACTGTCTCTTAAGATCGTCATACACGTGATTGTAGCTTGTGTAAAATGtataatttaaaaacattaacttTGAACTGAAAATACATTTATCAAAGAAACTGATGTCATTTCACCAGCAGATGGCAGCGGTACTCCATGTTCATACTgcaattctgtgtgtgtgtgtgtaagattcGGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494673 lncRNA downstream 133034 72871982 ~ 72872221 (-) True G436927
TU494640 lncRNA downstream 133912 72815127 ~ 72871343 (-) True G436896
TU494649 lncRNA downstream 174689 72829457 ~ 72830566 (-) True G436904
TU494648 lncRNA downstream 176650 72826445 ~ 72828605 (-) True G436903
TU494600 lncRNA downstream 260700 72741760 ~ 72744555 (-) True G436857
TU494785 lncRNA upstream 24502 73034903 ~ 73035154 (-) True G437022
TU494782 lncRNA upstream 25510 73035911 ~ 73036747 (-) False G437020
TU494783 lncRNA upstream 25510 73035911 ~ 73038795 (-) True G437020
TU494788 lncRNA upstream 30142 73040543 ~ 73041059 (-) True G437024
TU494737 lncRNA upstream 30682 73041083 ~ 73041743 (-) False G436982
XM_036978325.1 mRNA downstream 138987 72856054 ~ 72866268 (-) True LOC110524515
XM_036978322.1 mRNA downstream 138989 72852068 ~ 72866266 (-) False LOC110524515
XM_036978323.1 mRNA downstream 141118 72852068 ~ 72864137 (-) False LOC110524515
XM_036978324.1 mRNA downstream 146858 72852068 ~ 72858397 (-) False LOC110524515
XM_036978308.1 mRNA downstream 645384 72279402 ~ 72359871 (-) False LOC110524508
XM_021604246.2 mRNA upstream 43443 73053844 ~ 73062414 (-) False LOC110524518
XM_021604248.2 mRNA upstream 95638 73106039 ~ 73109903 (-) True LOC110524520
XM_021604252.2 mRNA upstream 121701 73132102 ~ 73163431 (-) False LOC110524523
XM_021604253.2 mRNA upstream 164305 73174706 ~ 73180889 (-) True LOC110524524
XM_036976526.1 mRNA upstream 177624 73188025 ~ 73188938 (-) True LOC110522885
TU494616 other downstream 229387 72774561 ~ 72775868 (-) True G436873
TU494589 other downstream 332429 72672154 ~ 72672826 (-) True G436847
TU494584 other downstream 388311 72616296 ~ 72616944 (-) True G436842
TU494572 other downstream 416679 72588284 ~ 72588576 (-) True G436830
TU493828 other downstream 883558 72040962 ~ 72121697 (-) True G436172
TU494824 other upstream 84393 73094794 ~ 73095336 (-) True G437054
TU494844 other upstream 111711 73122112 ~ 73125038 (-) True G437074
TU494857 other upstream 135957 73146358 ~ 73147128 (-) False G437079
TU494858 other upstream 135957 73146358 ~ 73147128 (-) False G437079
TU494859 other upstream 135957 73146358 ~ 73147128 (-) True G437079

Expression Profile