Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021604253.2 |
| length | 1279 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC110524524 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 73174706 ~ 73180889 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02737 | PSMB5; 20S proteasome subunit beta 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU494855 | lncRNA | downstream | 11322 | 73155642 ~ 73163384 (-) | True | LOC110524523 |
| TU494845 | lncRNA | downstream | 48342 | 73125420 ~ 73126364 (-) | True | G437075 |
| TU494843 | lncRNA | downstream | 52679 | 73121401 ~ 73122027 (-) | True | G437073 |
| TU494839 | lncRNA | downstream | 59854 | 73114613 ~ 73114852 (-) | True | G437069 |
| TU494837 | lncRNA | downstream | 60977 | 73113458 ~ 73113729 (-) | True | G437067 |
| TU495113 | lncRNA | upstream | 259355 | 73440244 ~ 73440536 (-) | True | G437318 |
| TU495538 | lncRNA | upstream | 305778 | 73486667 ~ 73488455 (-) | True | G437660 |
| TU495566 | lncRNA | upstream | 350719 | 73531608 ~ 73532196 (-) | True | G437680 |
| TU495601 | lncRNA | upstream | 413205 | 73594094 ~ 73594489 (-) | True | G437705 |
| TU495599 | lncRNA | upstream | 416488 | 73597377 ~ 73598010 (-) | True | G437703 |
| XM_021604252.2 | mRNA | downstream | 11275 | 73132102 ~ 73163431 (-) | False | LOC110524523 |
| XM_021604248.2 | mRNA | downstream | 64803 | 73106039 ~ 73109903 (-) | True | LOC110524520 |
| XM_021604246.2 | mRNA | downstream | 112292 | 73053844 ~ 73062414 (-) | False | LOC110524518 |
| XM_021604243.2 | mRNA | downstream | 164305 | 73005255 ~ 73010401 (-) | False | LOC110524517 |
| XM_036976526.1 | mRNA | upstream | 7136 | 73188025 ~ 73188938 (-) | True | LOC110522885 |
| XM_021604256.2 | mRNA | upstream | 26971 | 73207860 ~ 73218158 (-) | True | LOC100135942 |
| XM_036978342.1 | mRNA | upstream | 189550 | 73370439 ~ 73419304 (-) | False | LOC110524526 |
| XM_036978340.1 | mRNA | upstream | 189550 | 73370439 ~ 73421682 (-) | False | LOC110524526 |
| XM_036978341.1 | mRNA | upstream | 189550 | 73370439 ~ 73421683 (-) | False | LOC110524526 |
| TU494857 | other | downstream | 27578 | 73146358 ~ 73147128 (-) | False | G437079 |
| TU494858 | other | downstream | 27578 | 73146358 ~ 73147128 (-) | False | G437079 |
| TU494859 | other | downstream | 27578 | 73146358 ~ 73147128 (-) | True | G437079 |
| TU494844 | other | downstream | 49668 | 73122112 ~ 73125038 (-) | True | G437074 |
| TU494824 | other | downstream | 79370 | 73094794 ~ 73095336 (-) | True | G437054 |
| TU495056 | other | upstream | 189719 | 73370608 ~ 73410339 (-) | True | LOC110524526 |
| TU497050 | other | upstream | 1684370 | 74865259 ~ 74927797 (-) | True | G439002 |
| TU497119 | other | upstream | 1782571 | 74963460 ~ 74963696 (-) | True | LOC110523004 |
| TU497719 | other | upstream | 2082584 | 75263473 ~ 75265403 (-) | True | G439594 |
| TU497923 | other | upstream | 2390360 | 75571249 ~ 75575569 (-) | True | G439788 |
