Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031139 |
| length | 604 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_015585 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 33051730 ~ 33216740 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060929-1006 | Predicted to enable ubiquitin protein ligase activity. Involved in spinal cord patterning. Orthologous to human RNF220 (ring finger protein 220). |
| ensembl_id | ENSDART00000145588 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031132 | lncRNA | upstream | 160154 | 32866587 ~ 33029428 (+) | False | XLOC_015584 |
| TCONS_00033597 | lncRNA | downstream | 28298 | 33222962 ~ 33235257 (+) | True | XLOC_015586 |
| TCONS_00033598 | lncRNA | downstream | 272448 | 33467112 ~ 33468170 (+) | True | XLOC_015590 |
| TCONS_00033599 | lncRNA | downstream | 485409 | 33680073 ~ 33681136 (+) | True | XLOC_015593 |
| TCONS_00033273 | lncRNA | downstream | 564953 | 33759617 ~ 33771872 (+) | True | XLOC_015601 |
| TCONS_00033274 | lncRNA | downstream | 702806 | 33897470 ~ 33898732 (+) | True | XLOC_015603 |
| TCONS_00031136 | mRNA | upstream | 13917 | 33051730 ~ 33175665 (+) | False | XLOC_015585 |
| TCONS_00031135 | mRNA | upstream | 73981 | 33051730 ~ 33115601 (+) | False | XLOC_015585 |
| TCONS_00031137 | mRNA | upstream | 110251 | 33052169 ~ 33079331 (+) | False | XLOC_015585 |
| TCONS_00031130 | mRNA | upstream | 338961 | 32846602 ~ 32850621 (+) | True | XLOC_015582 |
| TCONS_00031129 | mRNA | upstream | 343258 | 32843133 ~ 32846324 (+) | True | XLOC_015581 |
| TCONS_00031144 | mRNA | downstream | 131858 | 33326522 ~ 33328688 (+) | True | XLOC_015587 |
| TCONS_00031145 | mRNA | downstream | 141247 | 33335911 ~ 33415051 (+) | False | XLOC_015588 |
| TCONS_00031146 | mRNA | downstream | 173750 | 33368414 ~ 33422798 (+) | False | XLOC_015588 |
| TCONS_00031147 | mRNA | downstream | 187984 | 33382648 ~ 33399486 (+) | False | XLOC_015588 |
| TCONS_00031148 | mRNA | downstream | 188090 | 33382754 ~ 33415051 (+) | False | XLOC_015588 |
| TCONS_00031127 | other | upstream | 362329 | 32826503 ~ 32827253 (+) | True | XLOC_015579 |
| TCONS_00031124 | other | upstream | 398696 | 32790363 ~ 32790886 (+) | True | XLOC_015577 |
| TCONS_00031122 | other | upstream | 429250 | 32758663 ~ 32760332 (+) | True | XLOC_015576 |
| TCONS_00031120 | other | upstream | 482171 | 32701851 ~ 32707411 (+) | True | XLOC_015574 |
| TCONS_00031119 | other | upstream | 486250 | 32701820 ~ 32703332 (+) | False | XLOC_015574 |
| TCONS_00031160 | other | downstream | 561714 | 33756378 ~ 33757568 (+) | True | XLOC_015600 |
| TCONS_00031162 | other | downstream | 705771 | 33900435 ~ 33900512 (+) | True | XLOC_015605 |
| TCONS_00031163 | other | downstream | 707661 | 33902325 ~ 33902455 (+) | True | XLOC_015606 |
| TCONS_00031167 | other | downstream | 732555 | 33927219 ~ 33933001 (+) | True | XLOC_015607 |
| TCONS_00031194 | other | downstream | 2636665 | 35831329 ~ 35831445 (+) | True | XLOC_015626 |
