RNA id: XM_036978357.1


Basic Information

Item Value
RNA id XM_036978357.1
length 5585
RNA type mRNA
GC content 0.51
exon number 22
gene id palld
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73691856 ~ 73787594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACGAGACAGTGATCAAAAGAGAGTTCAACTGGAGTCATTCCAAGAGATCAGAGTCCGACTCACGTGTCTCACAAGAATCTTTGTTGATTCAAAAaaatcatactgtctctctcctgctctgtctctctccatttgtGTGGAATTTGGCAGCTCTTTCCCCTGCTCcctcccactcttctctctctgtgcctcgtGTGTGTCTCAGTATTACTTGCGGTGGCAGAGttggtgagtgtgtcagtgtttcTGGCAGTGGCTTAGTGAGGGTCTCTCTCTCAGAAGTTGAAACTTTCTATCACTCTTCAATCACTTAACTTGGAGATAAAGGAAATCAGAAGTGACATCATTCTGATATTCAATAACTCGGGAAGTACCTCAGCACAGgtggTTCTGTGAGGGGCGGGAGCTGCACCACTGTCCTGACATCCAGATCTGGAGGGATGGTGCCCTACACACGCTGGTGATCGCTGAGGCCTTCGAGGACGACACGGGACGCTACACCTGCGTGGCCTCCAACAGCCTGGGGGCGGACAACACCTCGGCAGAGGTCTACATCCAGGGTGCTTCATCCTCCGACTCAGAAGGAGAAGTGCAGAAGTCCAGATCAGGAGCCATGCCTCAGGTCCAGAAGAAGACGACTTCAATCTCCCTGTCCATTCGTTCACCTTCACCCAAGAGCCCTGAGGCTGTACCTCACCGCTCCACCCTGGTCCTATCTGCACCCCCACACCggATGCAGAGTCCAGTTTATTCACTATATGGAGGTGGTGGTCCTCTTACAGCGCCCCCTATCTTTACCAAGctcTTACAGGATGCCCAGGCATCAGAGGGTCAGGTGGTGGTGTTGGAGTGCAGGGTTCGAGGCAGCTTTCCTCTGCAGGTCCAGTGGTTCAGACAGGGACAGGTCATCCAGGACTCTCCAGACTTCCGCATCCTGCAGAAAAAGCCACGGTCTGCAGCAGAGCCAGAGGAGATCTGTACACTGGTGATAGCAGAGGCCTTCCCAGAGGATGGAGGTCAGTTCTGCTGCATTGCAACCAACCTTTACGGCTCCGTCAGCAGCACAGCCCAACTCTCTGTCAGTGGAGGGGCCTTCAACACTCCCACAGcggTGTACGACTCGGTCAGGAATGGTGTGGCGCCCGGGGATGACTCTGTCTTTGAGGACACCCAGGCCTTTCCCCCTCCCCCGCCCACAGAGATCAGCCTATTGGAGGTTCCGCCCAAGGTCCCACCCAGTACCTGCGCCGAGGGTTTCCACGTCAACGAGCTGGAGATCTGGCCCAGCATGTCGGGCCTGCAGCCTGTCCACATGTACCACGACGTGGAGGGTCAGGACCGGGCCAACTGGGCACTGCAGAACGGCAGGCCTGCCAGCCCCCCTCAGCCCTCCTTCAGCCTGCTTCCCCGAGAGGCCCAGCCAGACTTCCCAGGCCCAGCCAAGATGTCTCCGTCCCCAGTGAAGGAAGGTCCTCCACTGCCCACCAAGCCCAAACTAGCGGAGGGtatagaggaggagacagaacatgACAGGAACGCAGAACAGTTGAAGCAGCTGCAGGATCAGATTATATTGGAACAGCAGGAAGCAGCCAATTGGATCCAACATCAGGAGCAAGAGCAGGAAGTCCCGCCTCTGCCACAGCAGCCCCCGGAAGTGCCCTCTCTGCcttttcctcctcttccccctcctccctccttccaggAGCTGGAGAGCAGCGCCATGCAGACCAGTACCTTCAACTACGCCCGGCCAAAGCAGTTCATTGCTGCCCAGAGCCCTGGGGGGACTGGCCCTATGGGGGGCTATGTCACCCAGTCCTCGGGGTCCTCTGGTTCCAGCctgccctcccccctctccccacccacCTCACAAAAACCCTTCACCAGGGTTGTCCTGCCTCCCTTCAGTAAGGGCGGCAGCATTGAGTCTcagtccccttcctctccctccttcccacctccacctcctcccttccTCAGTAGCAGCATTTCATCCTTGTCAGGCCCTGCCAAAGacttccctccaccccctcctccccctcctccacctgccTCTTCGGCTCCCCCCTACTCCCTCGCCCACTCCAACAGCTCCTCCCCCTTCACCTCCATGCCCCAATCACCTGCTGGCTTCCTGGCCTCTGTCCTTCCAGCCACACCCACTAGCCCATCCTTCAACGCCCTGGGCCTGCCTAAAGGGAACGGGACTATCAGTGCTTTTCCCCGGAAGCAGTCCAGAGGAACCCCACGCCTGGCCTCAGACTCTGATATCCAGGGAACCAAGGATGCTGTCATTCAGGACCTGGAGAGGAAGCTACGATTCAAGGAGGAGCGCATGAGCAACggacaacagAGGTTAACCTATGAGGAGAAGATGGCTCGCAGGCTGCTGGGGGCAGACAACGCAGCCACAGTACTAAACACACAGCAGCAGGATGAGGAGCCAGTTACACagGATTCCAGTTCCTCTGACATAGAATCTGTCCCTCAAAAGGAGTACAAGGTGTCCAGCTTTGAGCAACGCCTGATCAGTGAGATCGAGTTCCGTCTGGAGCGCTCTCCAGTGGAGGAGTCTGACGACGATGTGCAGCATGACGAGGATGCCACCGGCACCGGGGTGGTGCCCTTCTTCGACAGCAAGCTCAAACACTACAAGGTGTTCGAGGGCATGCCCGTCACCTTCTCCTGCAAGGTCATTGGAGACCCCAAGccaaagATCTACTGGTTTAAGGATGGGAAGCAGATCTCTAAGAGGAGTGAACACTACAGGATCAGCCGTGACGCTGACGGGACCTGCAACCTCCACACAGCCGCCGCCTCATTGGACGATGACGGCAACTACACCATTATGGCTGGTAACCCTGAGgggagGGTGAGCTGTACTGGAAGGATGATGGTCCAGGCAGTGAACCAGAGGGGGAGGAGCCAGCGCTCTGCACCTGGACACATCCGCAGACCTAGGTCTCGGTCCAGAGACAGTGGTGATGAGAACGAGAACATCCAGGAGCGTCACTTCCGCCCCCACTTCCTGCAGGCGCCTGGTGACCTCATCGTCCAGGAGGGTAGGCTCTGCCGGATGGACTGCAAGGTGAGTGGCTTGCCCACACCAGACCTGATCTGGCAGCTGAATGGTGAGACCATCCGCCCTGACTCCGCCCACAAGATGCTGGTGAGGGAGAATGGCGTCCACTCGCTGGTCATCGAGCCCGTGTCCAGCCGTGATGCAggcatctacacctgcattgccagCAACCGCGCTGGACAGAACTCCTTCAACCTGGAACTCATTGTAGCAGCCAAAGAGATGCACAAGGCCCCTTCGTTCATCGAGAAGCTACAGAACACTGGTGTTGCCGAGGGTTACCCGGTGCGTCTGGAGTGCCGTGTGTCGGCTGTTCCCTACCCACAGATCTTTTGGAAGAAAGAGAATGAGTCTTTCACGCACAACACAGACAGGATAAGCATGCACCAGGACAACTGTGGCTATCTGTGTATGATCATCCAACCAGCAATGAAGGAGGACGCTGGCTGGTACACCGTGTCTGCCAAGAACGAGGCTGGCATTGTGTCCAGCACTGCACGACTCGACGTCCACAcTCAGTGGCAGCAGCCCAACACTCCCAAGCCTAAGAAGGTGCGTCCGTCGACGAGTCGCTATGCAGCGCtgacagagagaggactggaCGTGAAGGCAGCCTTCTTCCCCGACTCCAGCCCCCTGCAGCCGGGAGGCCTGGTGGAGAGTGATGACCTGTAGAGACCAACGGGGGCACCACATGCCCAAACAAGTCCCTAATGTAATGCCTTAAAACTAACCCCTGACCCCAGTACCAGCCCTGTTCCGCCCCGTTCTCCCCAGACATAGGGGTAAATGTAACCCCCTCCATCCGAGGTGTTGTACAACAAGGCCACAGATACCTTTCTGGAAGATGGATGACGGGCAATGTGACACCCCGTAATATATGTGTCAATTAAACATGGATCCCAATTTAGGATCAGATGTTTCCATTTTGTCAACCATTAAAGCAGAGGAATCTACCCTGAGCGGCCATTGAAGTTTATTTTCGATTGTAAAACTGCCATTACCACACAAAAGTGTGTTCACCTCTGAAATGTCTGAGATATCGCACATGATCTCTCTGTAACAATTATGATTAAAGGTTTAAAGTTCAAGTTGAAAGTAGCATTATTATGCATGTTACAATGTTGCCATTTGTAACGCTGTATCTAAATGGATGACGTTTTATGAAAGACTCCCTCAACAAAGGCACCAAATTGTAGGGGCAGAGATATTTAGAAACGGGACAGACTTTGGATCTGCAATGGAAAGTCCAAAGCATGGGAGCAGCACATCATGTTTCCCAGAAGAGACCCCAAAACAAAGTTATTATTTTATATGGGTATCACAGCATAGTCTGGGTAACATAGCACAATATGGATATCAGCAGtgtctattttttttttgttacaagTAGCACAATACCCTAGATATCAGCATGGTTCAACATTTATCATAATTACCATAGATATTGCACAAGGCCGGGCCTTACTTACTTTTCGCTTCTGTTTTTTTGTCAGGTCAAATGACCTTGGAAGTTAAAACTGTTTAGTAACTTTAGATGAGTTGTGAAAAAGAGAATGTTGGCTGAATGATGCAGACACTGTTGAGAGCTTTGTGTTACCATAGTAACTTCAGTGATTGATGGAAAGAGAGGTCCGTGACATGCTAGGAGGTACTGGCATGTGAAGGTTGACTATAACAGGGACGGGATGAGGGGTTATCCTGGGCTAGGAGGCCCACAAGATCTGTCTCAGCCCAGTGTCAACAGTCACTTCAACGCTTGTGAACTGTGTGATACGTGAGTGGGAGACATCAAGAACAGACAAAAGCAAGTTTTTCAGAATGGAATTCAGTGTGAGAAGATGACAAAGCAATGGattatgttgatgatgatgaaatGATGAAGAAAATGACCGTTATGACAGATTCTGGAGATCATTTATTTCCTTTGATGTTTCAGTTTAAAATCTTCACAAACACATGAGACAGTCCTAAAAATGGCTTCAGTGGATTGATCACACACTACAGATGGTCTGCTTTATTTttgtatgaaaaaaaaaaactctgtatTTACTTTCCCAAGAAACTTGACATAAATGATGTATCTTCTCTAATGTTCAATGACAAAACATAATCCTGACTGTATTAAAATATCACACTTTTTAAAACTATATTGCCTTAAAAGATCACTTGGGCCTATTTCAATCACTATCTGTCCATATTTTTCTGAGGCACTTATGACAAGTATTTTTGACAATTATAAACTGTTTAGAAGGGAGAATATATGCACAGAATTGTATTGAAATGAGTAATTATATATTTTCTTTCACTACTGTATCACCAAATGGGCATATCTGGCTGTATCTGTTCAGATCATGTTGTTTCATCCTGCCATGACTGGTCACACAAACATATAGGACACCTTTTTGATTTATATGCCAATCTGTGCCTGTATATGGAATGTTCTCCTGATATCATGTTAGTTTATGAAAGATAATAAAAAAATCAAAGTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495677 lncRNA downstream 5985 73685559 ~ 73685871 (-) True G437771
TU495610 lncRNA downstream 85381 73605794 ~ 73606475 (-) True G437713
TU495607 lncRNA downstream 89944 73601684 ~ 73601912 (-) True G437710
TU495606 lncRNA downstream 90230 73601071 ~ 73601626 (-) True G437709
TU495599 lncRNA downstream 93846 73597377 ~ 73598010 (-) True G437703
TU495801 lncRNA upstream 72316 73832488 ~ 73832692 (-) True G437873
TU495806 lncRNA upstream 79729 73839901 ~ 73840186 (-) True G437878
TU495793 lncRNA upstream 84502 73844674 ~ 73847720 (-) False LOC118964642
TU495794 lncRNA upstream 84502 73844674 ~ 73846862 (-) False LOC118964642
TU495795 lncRNA upstream 85941 73846113 ~ 73846862 (-) True LOC118964642
XM_036978348.1 mRNA downstream 108757 73580650 ~ 73583099 (-) True LOC110524534
XM_021604281.2 mRNA downstream 108761 73579899 ~ 73583095 (-) False LOC110524534
XM_021604266.2 mRNA downstream 117034 73557373 ~ 73574822 (-) True LOC110524532
XM_021604258.2 mRNA downstream 247342 73431563 ~ 73444514 (-) True LOC110524527
XM_036978341.1 mRNA downstream 270173 73370439 ~ 73421683 (-) False LOC110524526
XR_005051856.1 mRNA upstream 84680 73844852 ~ 73847759 (-) False LOC118964642
XM_036978370.1 mRNA upstream 90742 73850914 ~ 73922512 (-) False fryl
XM_036978373.1 mRNA upstream 90742 73850914 ~ 73922512 (-) False fryl
XM_036978374.1 mRNA upstream 90742 73850914 ~ 73922512 (-) False fryl
XM_036978361.1 mRNA upstream 90742 73850914 ~ 73922513 (-) False fryl
TU495056 other downstream 281517 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 544728 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 544728 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 544728 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 566818 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 1105087 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 1203288 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 1503301 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1811077 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2826286 76586458 ~ 76590370 (-) True G441168

Expression Profile