RNA id: XM_036979058.1


Basic Information

Item Value
RNA id XM_036979058.1
length 2879
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110523002
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74062228 ~ 74075591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACTGTCAGAAATATCGCCTCCATTTGTAATATGGGCACCAATGCCTCTGCTCTAGAGAAAGACATTGGTCCGGAGCAGTTCCCAATCAACGAACACTACTTTGGATTGGTCAACTTTGGGAACACTTGTTACTGTAACTCGGTGCTTCAGGCCCTGTACTTCTGCCGGCCCTTCCGGGAGAACGTGCTGGCCTACAAGGCCCAGCAGAAGAAGGAGAACCTGCTCACGTGTCTGGCAGACCTCTTCCACAGCATCGCCACCCAGAAGAAAAAGGTGGGAGTCATCCCGCCCAAGAAGTTCATCTCACGCCTGCGCAAGGAGAATGACCTGTTTGATAACTACATGCAGCAGGACGCCCATGAGTTCCTCAACTACCTGCTGAACACAGTGGCAGACATCCTGCTGGAGGAGAAGAAGCTGAACACACAGGAGAAGCAGAACGGACGCCTCAAGAACAACGGAACGGCCATCACCACGAAGACCGAGCTCGAGAACAAGACCACGGAGCCCACCTGGGTGCATGCCATCTTCCAGGGCACGTTGACCAATGAGACGCGCTGCCTCAACTGTGAGTCCATCCGGGCCGTCAGCAGCAAATATGAGGACTTTCTGGATCTTTCTGTGGATGTAGAGCAGAATACATCAATAACAGACCTTCACTGTCTCTGGGACTTCAGTAACACAGAGACCTTGTGCAGTGAATACAAATACTACTGTGAGACATGCTGCAGCAAGCAGGAGGCCCAGAAAAGGATGCGTGTGAAGAAGCTGCCTATGATCCTGGCCCTGCACCTGAAGCGATTTAAGTACATGGAGCAGCTGCACCGATACACCAAACTGTCCTATCGTGTTGTCTTCCCTCTGGAGCTCCGCCTCTTCAACACCTCTGGAGACTCTGTCAACCTCGACTGCATGTACGACCTGGTCGCTGTGGTCGTCCACTGTGgcagTGGACCCAACAGAGGACACTACATCATAGTGAAGAGTCATGGCTTCTGGCTGTTGTTTGATGATGACATCGTGGAGAAAATCGATGCCCAGGCCATCAAAGAGTTCTATGGGTTGACGTCAGACATCTCCAAGAACTCAGAGTCTGGATACATCCTCTTCTATCAGTCCAGGGAGTAACTGGAATAAAcacccagccagagagagagaatgattggAACTCTGACCCTGACCCCTCTCTGAGTCATGTGCCAACGCCATTCCCCGTCTCACTGCCTTCCCTGGGTCTGCCTGGACTTCATTTCCCATAACCCCATGCTCTCCCTCCCTGCATTCAGCATGCTGGGAAGACTGTATAAACTGCCTTTTGTCCTTCAGCATCTGGACAGCACtttagaacaacaacaacaaaaaacaaacagtcACAACAACAAGGAGCAGGAAACATAAAGAAGCTACAACGGGCTGGTGTGTGATGCCCGTTTGTCTCCGCATGGGGCCAGGTCTGAAGACCTGAAGACCCACCATGGGTCACTCTTCCTGGGTCTGCCTGGCATACAGAGCTGGCTAGACTGGTACAGGTACAGACTGCTATGGGAAAGAAGATTGTAATATTTGTATATCTGTATAGTATGTCTATTTTCACGCAATGTCATAAGTTCATAAATACTTTTAGTAGGGTTATCCCGTGACCTTATATTTACAATGTCCAGCCCATAGATGTATTCTACCTGGGGATTGGCTAGAGCTGGGATGGAATGGAAGTTTTAGGGAGAGATATAAACTAGTTGAAAGAGGGTCTATGCATCTAGTGTCGCTGAACTGCATGTTTCGGTGTTCACTGTTTGAGCTGGTGTAGATTCAACTTGAGTTGTGACCAATCCAAACCTATTCATTGTAATGCTGAGATATGGTAGTTCTACAGAAGACCAGGATGCATGTAGCTCTCTGTCTGCTGCTCCCGTCCCCTAACATAGAGACTGGCCCAGGCCCCAATGCTCCTCTCCCAAGTTATAACCATGTTGTGATCCAGCCCCCACTCTAGAACATAGTCACTCACTGACACAAACTACATCTCTACTAGTCTCTAGACTAGTTTGGTTTCTGTCTAATCCCTGTTTTGTAAAACACTATTTATTGCTCTTATTTATGTCTAATGTTATAATGTTGACTGTGCTGGTAGGTGGAGGAGATTGTGCCTCAGGGCTTGACCCATCCAGACTCAATCTTGTCTTGTTTTGTATGTAACATCTCCCCCTCACTGAGTCTGGTaggtcagtgtttcccaactccggtcctcgagTACCACCCAATggtacacatttttgttgtatccCTGGACAAATATTCCTGATTGAACTCATTGAGgccttgatgattagttgaatcaggtgtgcttgtccgggGCTACAATTAAAATATGTacggttgggggtactggaggaccggagttgggaaacactggtgtaGGTAATATACATACAGCGCTCTATGGGGTTGACAACGTCTTTAGTAGCTTTACTTTGAAGTATGTGGATAGCTGGACCCTGTCGAAAGAACCACATAATCCACAGTTGTCAGGTATCATGAAAAGGAGTGTTTCTCACAGTGAGATTGGTGCAATAGGAGGTCAAGTGAGCTGATAAGATGCCGACTTCCCTTTGAAGAAAATATATATGTTGATATTAAATGTTAGTATGCTTTGCTACCAGCTAGTCTCCTCCCAGTCGgtagtgtgtatctgtgtgagaTGATCAAAGGAAGTGGAACTATTTTGCTAGGTGCGTTATGGGGCAGCGGTCAACATAATGTTGGTATGATGACAGAACGTACCTGTTTATTCTTCTTCCTATGTTGAAATATTGGTGTCTTTACATGTGTTCTTGTAACACCTTGTTATTTTGCatagttgcccccccccccccccc

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495875 lncRNA downstream 2646 74055001 ~ 74059582 (-) True G437945
TU495863 lncRNA downstream 27615 74034303 ~ 74034613 (-) True G437934
TU495862 lncRNA downstream 29632 74032244 ~ 74032596 (-) True G437933
TU495858 lncRNA downstream 38585 74023431 ~ 74023643 (-) True G437929
TU495855 lncRNA downstream 40687 74021333 ~ 74021541 (-) True G437926
TU495925 lncRNA upstream 33852 74109443 ~ 74109667 (-) True G437991
TU495926 lncRNA upstream 34417 74110008 ~ 74110237 (-) True G437992
TU496277 lncRNA upstream 134207 74209798 ~ 74216683 (-) False G438307
TU496278 lncRNA upstream 136799 74212390 ~ 74217446 (-) True G438307
TU496404 lncRNA upstream 365259 74440850 ~ 74445900 (-) True G438409
XM_021604322.2 mRNA downstream 46190 74009042 ~ 74016038 (-) True sgcb
XM_021604321.2 mRNA downstream 53659 73993983 ~ 74008569 (-) True LOC110524549
XM_021604320.2 mRNA downstream 90098 73969591 ~ 73972130 (-) True ociad2
XM_036978371.1 mRNA downstream 108351 73850914 ~ 73953877 (-) True fryl
XM_036978372.1 mRNA downstream 108352 73850914 ~ 73953876 (-) False fryl
XM_036978386.1 mRNA upstream 46712 74122303 ~ 74354093 (-) False LOC110524553
XM_036978387.1 mRNA upstream 46735 74122326 ~ 74354093 (-) True LOC110524553
XM_036978393.1 mRNA upstream 330255 74405846 ~ 74472255 (-) False LOC110524556
XM_036978392.1 mRNA upstream 330255 74405846 ~ 74499160 (-) False LOC110524556
XM_021604331.2 mRNA upstream 330255 74405846 ~ 74500847 (-) False LOC110524556
TU495056 other downstream 651889 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 915100 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 915100 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 915100 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 937190 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 789668 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 887869 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 1187882 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1495658 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2510867 76586458 ~ 76590370 (-) True G441168

Expression Profile