RNA id: XM_036978397.1


Basic Information

Item Value
RNA id XM_036978397.1
length 5549
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC110524560
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74729349 ~ 74770168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGACGAAGTTCAACACAACATCACCACCCGTTGATCCTAGTACTTCAACACAATTCCCTTATGCAATGTGCGTTTAAGACGTTCATCTGCATGTCTTAAGCCTTCACTCAACTGCGGAGCAATCCGCGGCATTTACAAGCGCGAGCTCTTCAGAGCAGACATTGGCACCGCACGCAATATAGATGGAattgtaataatggaacaccacTGGGTACTGTTTTCTGTCTTGTTGCAGTTATCCTTCCAAACAGGTAGCGCCAGACCCACCATCACCCCCAGAGGCCTCCACCTGGTCATTCCACTCAACATCCCCTTCAGCCTGCTTTGCCAGGGTGACCAGGTGGTGCAGTGGCAGCGGGAGGATCGCCCCAAACTGAGGGGCGAGGAGCGGACTAATGGGGCGTCCGTCCTGAAAATCCCCAGAGCTCAGCCTGGCCACATGGGCCGATACATCTGTCTGGAAGAGAAAACCGGAGAGCAGAGCTCTATCTACGTCTACGTCaaagATCCTGATAATGTCTTTAGAAAGACCATTGTGTTCAGTATCCTGACTCGTGCGGGAGACAGTGCCTCCATCCCCTGCCTAGCAACCGACCCGAGAGTGGTCAACCTGCGCCTGGAGCCATGCCATGGCGGTGCCCTCCCTAATGGTCTCCACTATGCTGCCAGCCTGGAGCGGGGCATGGTTATCTATGACACTAAGAAGGCCTTTGAGGGCTGTTACATCTGCACTGGCAGACTGAGCGGTGCCCTCGTTAAATCACACAGCTATGATCTGACTGTGCGACCAGTCCCAGATGTGCCCCCAGTGATTGAGTTGCGTGGGCCCAAGAGGGTGGTCCTGACGCGGGGCCAGAATCTCACCCTGACCTGCAGCACCACCAACGTCAATGGAGACATCAAGCTGAAGTGGGCCGCTCCGCCGGGCACGCAACCGGCAGTGGAGAATGGCTCACGCATCCTGACTGAGCCCATCACACACGTCCGCAGCGCTACACTCCAAGTCAACTTTGTCGGGACACAGGATTCTGGGAGATATCGATGTGAGGGTCAGAATGAGAAGGGGATCAGCTCTGAGTCAATCTGGCTGGACGTCTATGATAGAGGTTTCATCAACCTGGCTCCGTCAGATAACAGttctgtgcgtgtgcgtgctgGGGAGAGTCTGTCCCTGCATGTGGACATGGAGGCCTATCCCAAACCGCATACCTTCTCCTGGAGCTTCTCAGGCCAGCAGCTAAGGAACACCTCTGATCATGTCATCACCAAACAGAACCACcgacacagGTACAACAGTGAGCTCAGGCTGGTGCGTTTGAAAATGTCAGAGAGTGGGGTCTACACCTTTTATGCCTCCAATGGTGATGCAACAATCAATCAGTCATTTACCGTCTACGTTATCAGTAAACCAGAGATTGTATCTCATGATGGCCCAGTTGATGGACAGGTGCGATGTGTAGCTGAGGGATACCCTGCCCCACAGATCACCTGGTACTACTGTGAACAGCCTTATATGAGGTGCTCCCACCAGATGAACGCCACTCAGGAGGAGCAGGACATTGTCACAGTGACATTGTTGAGTCCTTCCTTTGGGAAGACGGAGGTGGAGAGCAGGCTGAACATTACCACAGGAAGATTCCACACGCTGGAGTGTGTGGCCACCGTGGAGGGAGAGCAGGACTTCACACTGTTCTCTATCAGTGAGAGAACAGTTCCCCATGAGCTCTTCACACCTCTGCTGATTGGCATAGTGTCAGCCTCCgccctcctcatcctcatcctcatagTGCTCTTCTACAAGTACCTGCAGAAACCCAAATACCAGATCCAGTGGAAAGTCATTGAAGGTATCCACGGAAACAACTATGTGTATATTGACCCTACCCAGCTCCCATACGATCACGAGTGGGAGTTCCCCCGGGACAAACTGCGTTTCGGGAAAACTCTGGGCTCCGGAGCCTTTGGGAAGGTAGTGGAGGCTACTGCTTATGGAATGTCCAAAGCTGATACAGTGATGACAGTGGCGGTCAAAATGCTCAAACCCAGTGCCCATGCCACTGAGAAGGAGGCTCTGATGTCAGAGCTGAAAGTTCTCAGTTACCTGGGAAACCACATGAACATTGTCAACCTGCTGGGAGCCTGTACTGTTGGAGGCCCAACCCTGGTGATCACAGAGTATTGCTGCTTCGGTGACCTCCTCAACTttctgaggaggaagagggagacgtTCTTTTGTGACACGTTAGGGGAGGACTGCTACTACAGGAATGTCATGCTGCAGAGGGAGACAGCTACAGCTGGGTCAGATGGAGACAGCAGGAATGGCTACATGGATATGAGGCCTTCTGTCGCTGGTGTCCTGCCCAATGGCTTCTCCTCAGAGAAGAGAATCTCGATACGCAAACCAGGTGGTTCCAGTAGTGAGCCTGATGTTGTGAGTGAGATGCTCCATgaggacagtctctctctggacACTGAGGATCTGCTCAGCTTCTCCTATCAAGTGGCCAAAGGCATGGACTTCCTGGCTTCTAAAAATtgcaTCCACAGAGACCTGGCTGCCCGGAACATTCTGCTGACTCAGGGGCGAGTGGCAAAGATCTGTGACTTCGGCCTGGCCCGTGACATCACCACAGACTCCAACTATGTAGTCAAAGGCAATGCCCGCCTCCCAGTCAAGTGGATGTCTCCAGAGAGCATCTTTGAATGTGTGTACACATTTGAGAGTGACGTATGGTCCTATGGCATCTTGCTCTGGGAAATCTTCTCACTCGGAAGCAGTCCATATCCTGGGATGCTTGTGGACTCAAAGTTCTACAAAATGATTAAGGAAGGATATAGAATGGATGCACCAGAGTTTGCACCGAGTGAAATGTATGAGATAATGAGGTCGTGCTGGGACTCGAACCCCTTTAAGAGACACTCCTTCAGCAAGGTGGTGGAGAGGATTGAACAACAGCTGTCAGACACCACAAAACACatCTATCTGAACTTCAGCTCCAAGTTTCCGGTTACAATGGGGCAACAGGTTACCAGCGTGGACCAGGGGACGCAGAATGCCAACATCGTTTGCCTCAACTCTGTGGGCAACAGCAACGCCTCCACTCAGCCCCTATTGGCCAGCGCCAGCGATGACATCTTTCTGGGGGAGATGGCCACTGGGCTCAGGGTCCACCAGGTGTAAGGCCCCACCCACGATGGCTGCCCCATAAAGTGCCTGTTCAGTGCCATCCCGAACACCCCACCACACCCTATTCCAATCATATATTGTGTCTAGCTATTAACCACCCCCTCCCAACCTTATGCCTAGCTGTTAGCCTCCCCTTTCAGACCGAGGTTTTAAAGAAGGATCCTCTCGAAACCTCTGCTCCTGGCCGCCTTAGGGGTTACCATTCCTAGATCATTACTGCATATACATTTTGATGTGCTGTTTGAAATGGACACTATAGTTTATAGCTCCATAGTAGTGCTATTTTCAGAGGACTTTCCTCAATGTTGCTGTTACTGTATCTTATATGTTTCatacaatgtttttgtttttcacaTTTCCGTTGTCAATGTATTAAACTGAATTACTatgttttgttttaaatatatattttttcttaaaCTAAATAATGTAGCATTTATAATGGTTAAAATACAACTATTGCTGGAGGTGAAAGTACTTGAAATGTAACATCTTTCCAGATGTAGGCATCATGTAATGAAGCTTTCAGTTGACCTTTTTTTCTGTTGCgtcttttaaaaaatgaatgttaGTATTATTCCACAAGTTCAGTTTTGGTGATTATGTGAAGGAGAGACATTTCTAGGGCCAATGGCTGAAATTATATTCAGGAAGATAAGTCTCAAAACGTCTCAATCTAATGAACCAATAAGCATGGTACTATGACtgtttatatgtgtatatattgacCTTGTGTATGACTAGTAATAAGCCTATGATGTGAGAGGTAGCATTAGCTTAGATTCAGCAAAGGTTGCTTGCTGGAGAATCCttgtaaatatgtaaatatgtTGCTTGTGTCGGCACCTCTTCTGTCTTTTACAGTATGTGACCCTTGTTTACATTTGTCATCAGACAGGTACTGCCATATCACTATGGGGTTTCTTTAGTATAAAAACTGTCACCAAAGATGGGTAAGGTTGAAACAGTGCGTGGTTAGGATGAGCATACTGTATAAGGGAAAAGGTGATTAGCCAGTGGATGCTTTCTACTCTTAAAGATGGTTAAAGAAGGCTTTCTGTTTTGAGACAAAAAGACAATGATGCTCGTTTCAAATGCCAATGTGAAGCTTGCAGAACAAACCAATAACTGTTCTGAGAAAAAGCCAATGGGAGGAATTCTGCTCAGATGAATAGCCAATTTGGTGTTAGATGTTAGAGCTGTCTAATCAAACAAGGTTGTGACATGTCTTATAGCTCCCTACAGTCCTGTGAGCAGTACCCTCAGTGCTCCCATCCCATCCATCAGTAGCTGATTTCTCAGCCTTCCCTCCGCTCTTTATGTCCGGCTGCTTCCTCTGACGGAAGTGTCATTTCCACCATCTCTCAGCCAGAGCTCTGTATCACTTCAGACTCCCATCACTAGGACTTCCCTCTTCCCACACTGAGATATTGTTATGAAGAGCACCTGGAAATGCACAGATGGAaagtgtgtgcgtctgtgtgtaggTGCCACAGTATGAAATGTAGGACATTTACCCAACTCGCTTTTCAACCCTGTCTCCTTCCCAAAACTGGCTCTTTGTAAATATGTGTGTGAATACAATGTAATGTGGATGCTGTCttaatgttttattttctattgATATGGTATATTTAATGCACACCTCTGATATTCTGTAATATAAAACATTTCCTACCACAAATAGATACACAGATACATCCATTAAATATATACTGTACGTCTTTTTTCTTTGGAGGTAAGCTGCTTGTTTTTCTGTTTTCTTGTGACAACTGTAGATGTCTTTGTTTGGATGTTGCTGTAGATTCGTTGTGTAGTGACATTTTCTCCTTGGCTAACCATCACATGGTCTTCTACAAGCAAGTCAAAACATTTGTTCTTTATTTTCAAATGCTTTTGTACAGCTTTGCCTTGAAAATCTAGTTTGTTTTCAGCCCCAAACAGGAACGCAATAGCAAATATTGTTCTAATTTGGCTAATTACAAGCAAGGACGAGTAGAGCTGTAGGGCAATGACTCACATCAATGCAATGCTCCTTCCCCATTCCCCCTTCTGTCACATGGAATTGGAGACCTCAAAATAGGTAATTACGCACTAATAACATAGTAGTTACATGTTTATCTGTGTCATTCATCACACTGTTAAAGAGAGCACAACCAAAATATTGTCTGATTATCCCTAACATCGTTACGCTGGAAAAGTTGATATAATATGATGCTTGTTTTCAAATTTTTAGGACATTTGTATATTTGTTGTGTATTTATTTTACAAGAGACAAAGTTGTTTGTTGTGCACATTTGCAATGTGTTGCTATCTCTTGTGTTACtgtaatataaataaaataaaccctTTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496641 lncRNA upstream 30252 74698822 ~ 74699097 (+) True G438628
TU496636 lncRNA upstream 37341 74691723 ~ 74692008 (+) True G438623
TU496608 lncRNA upstream 65721 74662520 ~ 74663628 (+) True G438595
TU496612 lncRNA upstream 93420 74635628 ~ 74635929 (+) True G438599
TU496609 lncRNA upstream 97633 74631486 ~ 74631716 (+) True G438596
TU496836 lncRNA downstream 130985 74901153 ~ 74902477 (+) True G438807
TU496863 lncRNA downstream 157885 74928053 ~ 74928567 (+) True G438831
TU496868 lncRNA downstream 180120 74950288 ~ 74950686 (+) True G438836
TU496873 lncRNA downstream 195200 74965368 ~ 74965605 (+) True G438841
TU496944 lncRNA downstream 326799 75096967 ~ 75099072 (+) True G438904
XM_036978394.1 mRNA upstream 66900 74638146 ~ 74662449 (+) False LOC110523003
XM_036978395.1 mRNA upstream 66900 74638146 ~ 74662449 (+) True LOC110523003
XM_021601335.2 mRNA upstream 98676 74628427 ~ 74630673 (+) True LOC110522886
XM_021604333.2 mRNA upstream 104760 74623051 ~ 74624589 (+) True LOC110524557
XM_036978390.1 mRNA upstream 345667 74360777 ~ 74383682 (+) True LOC110524555
XM_021604337.2 mRNA downstream 65280 74835448 ~ 74841452 (+) True LOC110524561
XM_021604350.2 mRNA downstream 161982 74932150 ~ 74946069 (+) False LOC110524562
XM_021604351.2 mRNA downstream 161982 74932150 ~ 74946069 (+) False LOC110524562
XM_021604352.2 mRNA downstream 161982 74932150 ~ 74946069 (+) False LOC110524562
XM_021604347.2 mRNA downstream 161982 74932150 ~ 74946070 (+) False LOC110524562
TU495122 other upstream 1234265 73456301 ~ 73495084 (+) True G437327
TU494306 other upstream 1733614 72995499 ~ 72995735 (+) True G436588
TU494101 other upstream 2224914 72503460 ~ 72504435 (+) True G436403
TU492480 other upstream 3042180 71675871 ~ 71687169 (+) True ralgps2
TU492302 other upstream 3430449 71298615 ~ 71298900 (+) True G434829
TU496740 other downstream 1841 74772009 ~ 74776469 (+) True G438719
TU497242 other downstream 401136 75171304 ~ 75178287 (+) True LOC110524571
TU500137 other downstream 2498044 77268212 ~ 77268766 (+) True G441903
TU500530 other downstream 2788162 77558330 ~ 77583227 (+) True G442273
TU501262 other downstream 3475671 78245839 ~ 78258456 (+) False LOC110524622

Expression Profile