RNA id: XM_021604343.2


Basic Information

Item Value
RNA id XM_021604343.2
length 4866
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC100135915
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74848830 ~ 74891311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAAAATGCGCATGCGCGTCAGGAGACCGCGGTAGGCCCTGCTGTTTATCCAACTCCAGTTCAACCCAGCGCAAAAAAACAAGGAGCAGGAAAATCCCGATGAACAGAGAAGaTCCCCGAAGGAAAACATCTCTTTTCTAGTCCAGTACCATAGCGGCTCCAGACGAACCATGTGATTGTTAGAGCATCCGATGTAGCTGTCATGTGGTACATCCACAGCCCAGCACGGCGGAATGCTCAGCTCAGCAAGGAGCCGTTGACAACCGCTGGCCTTTGACAAAGGATCCTCCCAGTGACTCTTgtaactacccccctcccctaggGGGGACACAGACCTCTGCCATCCCCACAGTGCCTCCACATTGGGTGGACCTTCATCCTACACCACACTCCTCATCCTCCCACAGAGTCTGCTAGACAGGAGGTTCATTCACAAATGTCTACCTCACGATTAAAAGGCCCCTCTCCATAACTGCGACCCTGAACAGGCTACAAAATGACTTCCAGTATAGGCGGGGATGACGCCAGCAGTATCTTTGATGGGTTAATGGAAGAAGATGAAAAGGACAAAGCAAAACGAGTGTCCCGTAACAAGTCTGAGAAGAAGCGCAGAGACCAGTTCAATGTCCTCATCAAGGAGCTGGGTACCATGCTGCCAGGCAACACCCGAAAGATGGACAAGTCCACCATCTTACAGAAGAGCATCGACTTCCTACGCAAGCATAAAGAAATAGCTGCGCAGTCAGAGTCGAGTGAGATCCGACAGGACTGGAAACCTCCTTTTCTTAGTAATGAAGAGTTCACACAGCTGATGCTGGAGGCATTAGACGGCTTCTTCCTAGCAATTATGACAGATGGGAACATAATCTATGTCTCAGAGAGTGTTACATCTCTACTGGAACATCTTCCTTCTGACCTGGTGGATCAGAACCTGTTGAACTTCCTGCCCCTGGGGGAACATTCAGACGTGTATAAAGCCCTGTCGTCTCACATACTGGAGGGAGAGACGCTAACGCCAGAGTATCTCAAGACGAAAAACCAGTTAGAATTCTGTTGCCACATGCTCCGAGGGACGATCGACCCCAAAGAGCCTCCTGTGTATGAGTATGTTAAGTTCATCGGAAACTTCAAGTCCCTGAATAATGTGCCTAACTCAACTCGAAATGGCTTGGAAGGGGTGATCCAGCGGTCACTCCGGCCCGCTTTTGAGGACCGAGTCTGTTTCATAGCAACTGTGAGATTAGCCAAACCACAGTTTATCAAGGAGATGTGCACTGTTGAAGAACCCAATGAAGAATTCACCTCTAGACACAGCTTAGAATGGAAGTTCCTCTTCTTGGACCACAGGGCTCCGCCCATAATAGGTTACCTGCCGTTTGAGGTTCTGGGTACATCTGGATATGACTACTACCAcgtagatgacctggagacacTGGCCAAATGCCACGAACACTTAATGCAGTATGGGAAGGGGAAATCGTGCTACTACAGGTTTCTCACCAAAGGTCAACAGTGGATCTGGCTCCAAACCCATTACTACATCACCTACCACCAGTGGAACTCCAGGCCCGAGTTCATCGTCTGCACGCACACTGTCGTCAGCTATGCTGAGGTGAGGGCTGAACAGCGCAGAGAGCTGGGGATTGTTGAGGAGTCACCGCCAGAGATCTCTGCAGTAGATAAGCAGTCTCAGGACTCTGGTTCTGAGTCTCAACACCAGCTCAACACCTCCAGTCTGAAGGAGGCCCTAGATGGCTTTGACCGCAGCCGGACGCCCTCGGCCTCCTCACACAGCTCCCGCAAGTCCTCGTCCCACACTGCCATCTCCAACCCAGCCTCACCTAAGCTTAAGACAGACAGGGGTACACCGGGATGCCAGTCCGTCTCTGCTATTGAGATGACATCACAGCGAAGATCATCCATCAGCAGTCAGCAATCGATGAGCTCCCAGCACACCCAGAACACAGGGCAGAACATGACCCCGTCCATGGTTCCACAACAACAAccgcagcaacaacaacaactgcaacAGCAGCAACCACCACCTCAACAGCAGCAGCTTCAGATCCAGCCCAGTGTCCAGCCCATGGTACAGTTTTCCACCCAGCTGGACGCAATGCAGCACCTGAAGGATCAGCTGGAGCAGAGGACCAGGATGATCGAGGCCAACATCcagaggcagcagcaggagcTCAGGCAGATCCAGGAAGAGCTCAACAAGGTGCAGGGCCATGGCCTACAGATGTTTCTCCAGCCGGGTACAAGTGGGCTGAGCCTGGGCTCTGTGCAGCTGGCACACGGGACCACCATGCAGCCAGGGGGTGCTCTCACCATGCATGGCCAAGTGGTGTCTGCAGGCAGTCTGCAGGGCAGCACTCCACAGCAGCATACGGTCCAACAACAACCCCAGCAGCAGTCCCAGCCCCAACAACAGAACCTGTTACGAGACACCAGCTCTGTCCTCTCACAGTCTTCAGTGCGGTCGACCCACTCTCTGCCGCCCCAGCAGAGTGCCCTGCCGGCTTCCCTCTACAACACCATGATGATCTCTCAGCCCAACCAGGCCAATGTGGTCCAGATCGCTACCAACTTGGCCCAGAACAGCAGCAACAACACAGCTGCCATGGCAAACTTTGCCCAGGACCGCTCGGGACAGATCAGGTACACGATGCCACCAACAGGgTTCCCTGCTGGCTCTCAGTTGCTGACTAAGCTGGTGACTGGGCCGATGGCGTGTGGAGCGGTCATGGTCCCTACAACCATGTTCATGGGCCAGGTGGTGACAGCATTCGCTCCTCAGCAGGGCCAGACTCAGACCATCAGCATTGCCCAGCAGCAGcctcagcagcaggagcagcaggctcaGTCTCAGGCCGAAGCCACACAGCAAGGGCTGGCCCAGCAACAAACACAGTTCCTCCAGGGCCCTCGGCTGCTCCATGGAAACCAGTCCACCCAGTTGATCCTGCAAACGGCATTCCCACTGCAGCAGCAAGGAGCCTTCGCCAGCACACaacaccagcagcagcagcagctacaacagcaacatcagcagcagcagcaacaactccagcagcagcaacaacaacagcaacaacagctccaacaacagcagcaacaggAGCAGCAGCTGGCCTCTCACAGGGCAGATAGCATGTCAGGCCGCTCCAGCACACAGCCCCAGTAACCTGGCAACGTCCGATCAGACATGTGGACTGAACCAAGTCTGTGTGATGGGGTGAAGAGATCGGTTGAGAAAGCAGTATTGAAACTATGCCTCTAAGACTACCCTGCTTCAACTTGGTCTGTAGAGTTTGTGATGGATCAATAGATGGATCTCTGGCTGCCTGCACTGAACTCATGAGCCACTGGTGCGTCAGATAGAAAACAATGCTGTGCTCACAGTGAGCACGGAGTCGCTCCGCTTCATGGCCATGCTTAGAACTCTTTCCCACAGAGACCTCCACTCTGTCGAGGTCCCCTCACCACTGTGACAGGGGCCAGTGCTTGTCCCCTACCCAGCCCTCTtgttgtgtgttcagtgtgtgctCCCGTCACCCTCACAGATTTTATTTATGCAGGACGATCCAGTCTGGAGCTTCAATCAAGGCTTCAAAGAAGTCCTACAGAGAGTAGACAGACGCCTCGTTTGTTTTCTGGTTTTCTCATATTGTTTTTCATGTCAAAGTAATTATGGGTcagaaaatatttttaagaatgtcATGTGGATTGAACTTTTATTGTACAGAACAAAAAATAATATGTAAATatatggaaaaaaagaaaaataactaATATTTTATATGATGCATGAAATTAAAAGCATAGTCTGTTATTTGTAGCTTTGAATATACCTTTTTTTCTAGTACTCTATGAAAAAAAGAACCTAAACACGCTTAATGGCTGATCTTTTCACAGATTTTCTTCTTCCCAGGGGCCGTGTGTCTTTTTGGGACCGTGGGTGTCTGTGTAGCTGATGCTGCTGGTCATGTCACAGTTTgtttcatcctcttcctcacttTCGTAGTTTTAATAAAACTCCTCTATTGAGATTAAAAACAGAAATGTTTTAAAGTTACAATATTTTTTTAGAATATATATTGTGGTCCAACGCGACATGTTGAGGACTAAATAGATACATGATTTTACTCAGAACAATATTTTAAATTGTAAATAAAGCAAAGACCCAAAGTTTACCAAAAATACTTTCAACGTATCCTATGGAAAGCTTATGAGCTCATTATTTTCTCTGCCATCATGCCTCATAACAGTTGCCATTGCTATtcataaacatgtttttacttttaaAAAGTCCTTAGTGTTTATCTTTAGTTGATTTAAATATGAGTGAGGCATTATGACTGTTTTAGTGTGGTCTCGTAACGCTCATAGCGATGCATGCAAAGTACCTCTAGGTACAGACTATACTAGTGCTTTACAATACTGTACTTTTTTAGCCCTAAAGGCTTGTGTAGAAAAACGAGTATtctcatataaatatatattcaatTACGTTTTAAATGGTCACAAAAATTACCTTAAACTCAGAAATGCAATTCACGCAGTGATATTTCTGCACATTATCCTATTTCTGCCGTTAGAAATCTAGTGTCTGTTCTATGAATGAAATGCATCCCCTTATGTTCCTACTCTCTCCTGTCACTTGCAACTACAGCATGTTTATCTCCTATTAAGCGTTTTATGGGTTGGCAATGTCAGAACAAACAAACGAGGGATCTCTCTCCTCTTTAGAACATTAAATGATGGTGGATCTCATCAAATAAGTGTTTGGACAGAATGCCGCTAGCAATTGTTGTGATCTGAGTTCATCTTCATGTGTTAATAAAGTGAGCTTGTCTGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496994 lncRNA downstream 2214 74844036 ~ 74846616 (-) True G438951
TU497004 lncRNA downstream 12725 74835494 ~ 74836105 (-) True G438959
TU497001 lncRNA downstream 72628 74775199 ~ 74776202 (-) True G438957
TU496996 lncRNA downstream 77438 74770467 ~ 74771392 (-) True G438952
TU496711 lncRNA downstream 139888 74708660 ~ 74708942 (-) True G438696
TU497060 lncRNA upstream 40860 74932171 ~ 74934342 (-) True G439012
TU497118 lncRNA upstream 70796 74962107 ~ 74962485 (-) False LOC110523004
TU497120 lncRNA upstream 73450 74964761 ~ 74965137 (-) True G439065
TU497132 lncRNA upstream 101825 74993136 ~ 74999899 (-) True G439076
TU497163 lncRNA upstream 153716 75045027 ~ 75094005 (-) False LOC110524567
XR_005051858.1 mRNA downstream 28523 74807206 ~ 74820307 (-) False LOC118964644
XR_005051859.1 mRNA downstream 28523 74807206 ~ 74820307 (-) True LOC118964644
XM_021604330.2 mRNA downstream 347725 74405846 ~ 74501105 (-) True LOC110524556
XM_021604332.2 mRNA downstream 347980 74405846 ~ 74500850 (-) False LOC110524556
XM_036978391.1 mRNA downstream 347981 74405846 ~ 74500849 (-) False LOC110524556
XM_036978400.1 mRNA upstream 10246 74901557 ~ 74911349 (-) False LOC110522887
XM_021601337.2 mRNA upstream 10248 74901559 ~ 74911344 (-) False LOC110522887
XM_036978399.1 mRNA upstream 10248 74901559 ~ 74911345 (-) False LOC110522887
XR_005051860.1 mRNA upstream 10249 74901560 ~ 74909778 (-) False LOC110522887
XM_021601336.2 mRNA upstream 10252 74901563 ~ 74911339 (-) False LOC110522887
TU495056 other downstream 1438491 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1701702 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1701702 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1701702 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1723792 73122112 ~ 73125038 (-) True G437074
TU497119 other upstream 72149 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 372162 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 679938 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1695147 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 2011071 76902382 ~ 76902771 (-) True G441483

Expression Profile