RNA id: LOC110523004


Basic Information

Item Value
RNA id LOC110523004
length 2647
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC110523004
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74961377 ~ 74968484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgattgacttGGAGGAGTGCAtggtcacgcagtcatggGATTTCGGAATGAAAAGCTCTGGAGGGGCCAGGAGCGGGTACGTGATAAACTTCAGACGAACAGTGAACTCTTGCTCTTTGGGTAGATCCGCTGTCGGTGCTGACGTTCGCTGTCATCGTGGCATCTGGGGGGCTTCTGTTCATGATAGAGAAAGGAATGCTGAATAGTATGGAGACACCTCCACATCGGGAAGCAGCAAGGTCATACTACCTCAGACAAGCTCGTCATCCTGATCCATCTGTGGACGCAGAATCTCAGATTCTCCAGGAGATCCGTAACTGAACCATATGTGGTCAGAAGAATATGCCTCACAGTGTGAGGTCCCTGACCCCCTGCAGAGGAAAACCCTGCTGCAGCACGTCCTGGTGAACGACGAGCACTGCTTCCTCTGCTGCTACGTCCCCAAGGTGGCCTGCTCCAACTGGAAGAGGGTTCTGAAGGTCCTGAGTGGGACTCTGGAGAACGTGGACGTCAGCATCAAGATGGACCACAAGAGTGACCTACTATTCCTGTCCTCCCTGAAGTCCGAGGAGATCCGCTACAGGCTAAAACACTACTTCAAGTTCATGTTTGTGCGGGAGCCCATGGAGCGCCTGCTCTCCGCCTACAAGTTTGGGGAGATCAAGGCCTACCAGGAGAAGTACGGTGCTGAGATCATCAGGCCCTACAAAAAGTGCCATTCCAAGGATACAGCAGTGGCTGGGGATGATGTGACGTTTTCAGAGTTTGTGCGCTATCTGCTGGACGAAGATGTGGAGCACAAGAACGAGCACTGGATGCCCATCTACAACCTGTGCCAGCCATGTGCCGTGTCCTATGACTTCATTGGCTCCTATGAGCATCTGGAGAATGATGCTGCCTATATGCTACAGCGTATTGGTGCACCTCCACACATCCACTTCCCTGAGAGACAGATGTGGTACAAGCCTGTCACCACGGAGATGCTGCACTATAACCTGTGCAGTCTGCCACTGAAGCTCCTCAGGGAACTCCTACCCAAGTACATTCTAGACTTTTTCCTGTTTACttacccccccccctcaacaCCACCACTGAATACTGCAGACATTAACTGCAAGATTGAATCTTATAACTGGAAATTATGTGTATACAGTATCTTGTTACACATTTGCCATGTCTTTTTATTCCTAAGGAACCAGCAGTATTTTGATATGTTACTTCTTACATTAGATTTGTTACAGCATAGGGAAATATGAATGTGTTGGAGTAATATGTATAAAACCACTAAAACTGGAAAGGAATTGAATTTTAGAAGCCTTCCTTGATGCAAAGTCATCAATTACATCATCATAGGAAATCTGCCCAGCAATTGCATGGTTAATACTGATGACAGCAAGACCACTAAGGAGTTCCTGTGGCATGGTGGACCTCAGGTAGAATTTGATGAGTTTCAGCTTTGAAAAGCTCCTCTCTGCTTCAGCTACGGTCACTGGAAGAGTAAGACCAATTCTGAGAGCAGTCCATAAATGTGGATGCATTTCTGAGAGCTCCCTTTCGTGAATAAATATCAGCAGCGCAAGCAGGGTCATGGTCTTCAATGGCAAGTCAGGCAAATTCTTCAGTTCCTGTGCAAGCTCTCTGCCATCCAAGTCTGAGTGTTCTTCATAGTGCAGTGTCATACTAAGGGCCTCACATTGTTCTGTCAGCTCCTCATTTGAGAGACTTTGGAAGGTTGACAGCACTCCAAACTTCTCTCCCACATTTTCCAATGTGTAAAATCTTTCCTGAAGGGCTGAGGTTgcagcatcaacaacaacattgaaAAATGTCACCTCCAGCTTCTTCAGGGCATCACTCAAAGGCTCAACAAATGATTTGTATGAAAAGTGCCGCTTTGTGGACCTCAGCCTTTTTTGTTGTAGAATATCCTTGTGCTGTCATAAAGCCTGTTGCCCTGTAGTTTCTGAgacctctctttgtctttctgagAAGACTGACTGTAACATCCACATGTATACTGGGAGACTGCATCAGCTTGCTCACATGTTGGATCTGGTTCAAAATGTCATACCACACCACTGTACAGATGCTGAAGCGGTATGATCCCACCTCCTCTGATAAGGACTGGCCCTCAATCTTTATCACAGGGTCTTTGGTATGATCAGTGCCTCTCAGCGCTGCTGCCTGATACCTCAGTGGCTCAACACTCTTAACTTTACACTCCCACCTTATCTCAGTCCACATCTTCAAAGTGATGTCCACATGTTTTTTCAGGATGGCCCATCGCTGTGTGGAGGCTGAGGACAAGGTGTACAGTTTGTGTAAGATGCCAAAGTAACCTGTGGCATCGACAGAACTTTTAGCAGCATCAGCCACAACCAGGTTCAATATGTGAGCCCCACATGGCACACATAGAGCTCTTGGATTCATTTCCAGGAGTCTGGCTTGGACACTTTTGTTTTTGCCGCTCATGTTGGCCCCATTATCATAAGACGGTCCTCTACAGTCCTCAAAATGAATGTTTAGCTCCTCTAATCTTTTGAGAATCAGGGATGCCAAATGTTGGCCCGTGGACTCCTCTGCCTCCAACAACCCCATAAAATGTTCCTTTATGTGGGGCTCCTCCCTGAGTGACACAATTCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497060 lncRNA downstream 27035 74932171 ~ 74934342 (-) True G439012
TU496994 lncRNA downstream 114761 74844036 ~ 74846616 (-) True G438951
TU497004 lncRNA downstream 125272 74835494 ~ 74836105 (-) True G438959
TU497001 lncRNA downstream 185175 74775199 ~ 74776202 (-) True G438957
TU496996 lncRNA downstream 189985 74770467 ~ 74771392 (-) True G438952
TU497132 lncRNA upstream 24652 74993136 ~ 74999899 (-) True G439076
TU497163 lncRNA upstream 76543 75045027 ~ 75094005 (-) False LOC110524567
TU497167 lncRNA upstream 124389 75092873 ~ 75099305 (-) True LOC110524567
TU497690 lncRNA upstream 246279 75214763 ~ 75215003 (-) True G439571
TU497693 lncRNA upstream 263121 75231605 ~ 75232553 (-) True G439574
XM_036978400.1 mRNA downstream 50028 74901557 ~ 74911349 (-) False LOC110522887
XM_036978399.1 mRNA downstream 50032 74901559 ~ 74911345 (-) False LOC110522887
XM_021601337.2 mRNA downstream 50033 74901559 ~ 74911344 (-) False LOC110522887
XM_021601338.2 mRNA downstream 50035 74901619 ~ 74911342 (-) True LOC110522887
XM_021601336.2 mRNA downstream 50038 74901563 ~ 74911339 (-) False LOC110522887
XM_021604358.2 mRNA upstream 58124 75026608 ~ 75036101 (-) True LOC110524565
XR_002473612.2 mRNA upstream 79961 75048445 ~ 75049425 (-) True LOC110524566
XM_021601280.2 mRNA upstream 113982 75082466 ~ 75091633 (-) False LOC101268909
XM_021601281.2 mRNA upstream 113982 75082466 ~ 75091633 (-) False LOC101268909
NM_001281319.2 mRNA upstream 113990 75082474 ~ 75091464 (-) True LOC101268909
TU497050 other downstream 33580 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 1551038 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1814249 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1814249 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1814249 73146358 ~ 73147128 (-) True G437079
TU497719 other upstream 294989 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 602765 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1617974 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1933898 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 2045515 77013999 ~ 77021375 (-) True G441630

Expression Profile