RNA id: TU497163



Basic Information


Item Value
RNA id TU497163
length 572
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110524567
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75045027 ~ 75099520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATATCCAAACAATGGTTGGGTTGAATCCAGCCCCTGACATGCacactgtgatggtgtaggtTGACTGGGCTCATTGGAAACTCAAAGGTCTGAGTAGTGCTGTGGTATtggatgtgtagtggtgtatgaTCTTCAAGTGTCCATGGCATGCAGTTGTACTCGCCAGCAAATATTTCACAGTTGCCTACCAAGGTGTTTTTGCTCACCAAGACTTGTTACCCACTATCACATTTTTAAGATGAATAATCATAGAAAAATAATGTACAAGGATCCTTTTTCTGATGGAATTCCTGTGGTTGTGCTAAATGAAAAATTGACATAAACACTCATGTATAAAGTAGATACATAAAAAAAGACAAATTAAAACATATCCATACTTTGCTTGTtgaaaataacatacatttttgtcataATGACTATGAAGAATAATTGCAGTGTGCTATCTGTGATTCGTGAACGGACCTCCAAGAGACTTCTTCTGTCAACCTGTACTGTAGGATTTCCACAATCAATCAGTTGGCTCTAACATGTGAAACAAGAAACTGTGGTTGCTGCAGTTGATGTCGTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU497132 lncRNA downstream 45128 74993136 ~ 74999899 (-) True G439076
TU497120 lncRNA downstream 79890 74964761 ~ 74965137 (-) True G439065
TU497118 lncRNA downstream 82542 74962107 ~ 74962485 (-) False LOC110523004
TU497060 lncRNA downstream 110685 74932171 ~ 74934342 (-) True G439012
TU496994 lncRNA downstream 198411 74844036 ~ 74846616 (-) True G438951
TU497690 lncRNA upstream 120758 75214763 ~ 75215003 (-) True G439571
TU497693 lncRNA upstream 137600 75231605 ~ 75232553 (-) True G439574
TU497755 lncRNA upstream 236395 75330400 ~ 75331071 (-) True LOC110524574
TU497780 lncRNA upstream 253543 75347548 ~ 75351451 (-) True G439653
TU497778 lncRNA upstream 267133 75361138 ~ 75362564 (-) False LOC110524577
XM_021604358.2 mRNA downstream 8926 75026608 ~ 75036101 (-) True LOC110524565
LOC110523004 mRNA downstream 76543 74961377 ~ 74968484 (-) False LOC110523004
XM_036978399.1 mRNA downstream 133682 74901559 ~ 74911345 (-) False LOC110522887
XM_036978409.1 mRNA upstream 18014 75112019 ~ 75148462 (-) False LOC110524568
XM_036978407.1 mRNA upstream 18014 75112019 ~ 75148464 (-) False LOC110524568
XM_036978408.1 mRNA upstream 18014 75112019 ~ 75148464 (-) False LOC110524568
XM_036978410.1 mRNA upstream 18014 75112019 ~ 75148464 (-) False LOC110524568
XM_036978411.1 mRNA upstream 18014 75112019 ~ 75148466 (-) True LOC110524568
TU497119 other downstream 81331 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 117230 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 1634688 73370608 ~ 73410339 (-) True LOC110524526
TU494858 other downstream 1897899 73146358 ~ 73147128 (-) False G437079
TU497719 other upstream 169468 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 477244 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1492453 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1808377 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 1919994 77013999 ~ 77021375 (-) True G441630

Expression Profile