RNA id: XM_036978427.1


Basic Information

Item Value
RNA id XM_036978427.1
length 2761
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110524583
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76288921 ~ 76324868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCGCCGTTGCCCCTGACACCAGAGTTCATCCGTAACATCCGTCTCCTGGGTCGGAGACCCACCACCCAActcatcactgacaacctgatcaGGAAGTATGGGACACACTTCCTGCTGTCGGCCACGCTGGGAGTGCTTTTGATAGTCATGTGGACAACGCCGTGAGGGTGGTTGCTCTTTACAGGAGAGACGCTTATTTCAGCTACAAAGCCCTGTGCATGTCGAGGAAACCAAGGGAATGGGTTTCCTGTTGGAAAGCAACACTTGTCGATTACCTCAGCCGGGCTCCTGGAAAGGTCGTAGTTGGGAAGAGGCCTTAACGATATTTGTGGACAAGAGAAAGCTGAGTAAGAAGGCGGATGTGAGCGAATACTCTGGCTCTGGCAACTCGTCCAGCGTAACTCTGGAGGCTCTGCACCAGCTGGCTGCCTCCTACTtcatagacagagagagcacCCTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATTaagGTAACAGAGACCCGGACAGGCCCTCTCGGATGCAGTAACTATGACAACCTTGATTCTGTCAGCTCTGTTCTGGTTCAGAGTCCGGAAAACAAAGTCCACTTGCAAGgccTGCAGGTTATCCTGCCAGACTACCTGAGGGACAGTTTTGTCCAGGCTGCTCTAAGCTACATTGCCTGTAATGGGGAGGGGGGCTTCGTCTGTAAGGACAATGACTGCTGGTGCAAGTGTGACACCAAGTTCCCAGAATGCAACTGTCCCTACATGGACATCCAAGCCATGGAGGACAGTCTACAGAGGATCACTGAGACCTGGGGGACACTCTATAAGGAGTTTGAGGATTCAGATGAGTTCAAGACCTTCCTTATGAGGCTCCCGCAGAACTTCTTCCTGAATGTGTCGACTATCCAGCACCTTTGGTCGTTGGATGGCGTGTTCCAGTGGCGCTATGAGCAGCTGGAGAACAGCATGAGTGTGCTCTTCAGACGAGCCCAGAGAGTGGTGTTCAAGCTCTTCAGCCTCAGCAAGAGGTGCCAGAGGCAGCCTCACATCCGCCTACCCAGAGAATGGCCCCAATCCTACTGGCTGATACACTTCCAGTCTCTCCTCTACTGTTCTGAGAACAACCAGCTGGGTTCCTTCTCTGAGGAGCTCCACAGCTGTACCTGCAGCTACGAGCACAGCCCTTGCCAGCTGCCCCCACCATGTGCCATCGGAGAGGGTCCCGCCTGCGCAGCCTGTGCCCCAGACAACCACACACGATGTGGGAGCTGCAACCCTGGCTACGCCCTAACACAGGGGGCCTGCAGACCCATGGTGGCTGACTCAACAGAGAACTACCTGGGCTttgagacagacctacaggacCTGGAGCTGAGATACCTCCTGCAGAGGGCCGACCGTAGGCTGGAGGTCCATGCCATCTTCATCAGCAATGACATGCGCCTGAACAGCTGGTTTGACCCATCCTGGAGGAAGAGGATGCTGCTGACGCTGAAAAGCAACAAGTACAAGTCCAACCTGGTCCACATGCTGCTGGGCGTGTCTCTCCAGATCTGCCTGACCAAGAACAGCACACTGGAGCCCGTCCTCACCCTCTACATCAACCCCTTCGGAGGCAGCCACTCTGAGAGCTGGTACATTCCAGTCAGTGAGAACAGCTTCCCAGACTGGACGGCCACCAAACTGGATCTACCCCTGGAGTGCTTCAACTGGACCCTGACACTGGGCAACAAGTGGAAGACCTTCTTTGAGACCATCCACATCTACCTGCGGAGCCGGATAAAGATGCAGGGCGCTGGAGGTCCGGCGGGGGCTATGAACGACAGCCTCTACTATGAGCCATTAGAAATGGTTGACCCTTCACGGAACCTGGGCTACATGAAGATCAACAGCATCCAAGTATTTGGCTACAGCATGCACTTTGACCCGGAAGCAATCCATGACCTGATCTTGCAGCTGGACTACCCATACACCCAGGGGTCCCAGGACACGGCTCTGCTGCAGCTACTGGAGATCAGGGACCGGGTCAACAGACTGTCCCCCCCAGGTCAGCAGAGACTAGACCTGTTCGCATGTCTGCTAAGACACCGGCTCAAACTGACAGCCAGTGAGGTGGTCCGCATACACGCCTCCCTGCAGGCCTTCAGCAACCGCCTGCCAAACTCTCTGGATTACGAGACCACCAAGCTGTGTAGTTAACAGCTACTATGGAATGACTGGGAGACGTTAAAGCTCAACGGCTACAAGGGGAACTATTGGACGGCTAAATGGTATACTGCTACAGTAGTTTGACTTTCAATGGTTTGTTGATTCTCTGGATTACAAGACCTTAAATGTATGTACTTAACTGTTACAGAGACACAATAAGGACATGTGAATTGTGTCTTTTGGCTTTCAGTTGGGTTGTGACTCAATGTCTTGTAAATGGTTGAGAGATGCTGGAAGCTGGTGCTTTTTTGTCCACAGAAGACACACAAAAACTCTGACACCATAAACAAAAACAGATCTAGAAAATCAGATATGTAACTCTCTCCACATCCACTTCACCATCTTGTTTAAATACAACCCTGCTCATTTATACAGTGTATACTGAAGCCAACTGGAGGGACCTTTTAAGATACATGTTACAGTCTGTTTGTTTGTAACTCTTTTATATGTTATTTTGCTTCAGTGACAGTGCACTTCCCATAACAACCAGAATACAGTGGTATCAGTCAGATTTGTAGATAACttgttattaaaacatgaattaaCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498599 lncRNA downstream 408967 75879642 ~ 75879954 (-) True G440427
TU498233 lncRNA downstream 428078 75860620 ~ 75860843 (-) True G440081
TU498195 lncRNA downstream 451945 75836775 ~ 75836976 (-) True G440043
TU498192 lncRNA downstream 453417 75835263 ~ 75835504 (-) True G440040
TU498080 lncRNA downstream 526893 75761772 ~ 75762028 (-) True G439931
TU498604 lncRNA upstream 6302 76324920 ~ 76342414 (-) True G440430
TU499088 lncRNA upstream 112481 76431099 ~ 76431450 (-) True G440899
TU499140 lncRNA upstream 150094 76468712 ~ 76468961 (-) True G440950
TU499155 lncRNA upstream 160206 76478824 ~ 76479026 (-) True G440965
TU499387 lncRNA upstream 245087 76563705 ~ 76566462 (-) True G441179
XM_021604383.2 mRNA downstream 334432 75882229 ~ 75954489 (-) True LOC110524582
XM_021601424.2 mRNA downstream 545212 75740110 ~ 75743709 (-) True LOC110523006
XM_021604382.2 mRNA downstream 582455 75671713 ~ 75706466 (-) True rgs8
XM_021604380.2 mRNA downstream 590001 75671713 ~ 75698920 (-) False rgs8
XM_021604379.2 mRNA downstream 628249 75658532 ~ 75660672 (-) True LOC110524580
XM_021604392.2 mRNA upstream 259625 76578243 ~ 76584083 (-) False LOC110524587
XM_021604391.2 mRNA upstream 259631 76578249 ~ 76586678 (-) True LOC110524587
XM_021604394.2 mRNA upstream 268387 76587005 ~ 76588448 (-) False glrx2
XM_021604398.2 mRNA upstream 268387 76587005 ~ 76588861 (-) False glrx2
XM_021604395.2 mRNA upstream 268387 76587005 ~ 76588907 (-) False glrx2
TU497923 other downstream 713352 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1023518 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 1325225 74963460 ~ 74963696 (-) True LOC110523004
TU497050 other downstream 1361124 74865259 ~ 74927797 (-) True G439002
TU495056 other downstream 2878582 73370608 ~ 73410339 (-) True LOC110524526
TU499371 other upstream 267840 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 583764 76902382 ~ 76902771 (-) True G441483
TU499853 other upstream 695381 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 1088124 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 1304681 77623299 ~ 77627214 (-) False G442381

Expression Profile