RNA id: XR_002473614.2



Basic Information


Item Value
RNA id XR_002473614.2
length 7475
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110524594
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76647620 ~ 76656898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATCTCATTGCACCCTCATATGCCATGTGCCAGtatcagttatttttaagtcttggttccaattgtttatattttttttatatttttcttctaAGAGACTGTGTTGCTACTCTTGGACAGTATATGCTGTAGCGTTGTGTGGATACCATGTGGTGTGGTATTGCATGTTGGTGGACTCTGCTGGAACTTTGAAGAGTGCTCCTGAGTACTCTGCCTATGCGGACCTGTGCTGGGGAGAGTCAGTCCATTCGATTGTGCTTAGCCAGGGCTTGAATGAGTCAGTTTAATACCAGAGGCTGATGTAAAGCTTCTAATTTTATTGCTTGGTATGCCATTAGTGCTTTGTATGCCATTTCTAGGGTGCACTCCCTTCATTATGCTGATTGGCTGTATGTGCTGTTTTGTCTTTAATGTTCATCACTTTGGGATACTTGGTCATGTAATCAACAGGTATGACTAACCCCTGATCTTGAAGATGTCTACAGCCACTTTCAGCCAAGGGAACTCTGGAATATCATGTGAGAGTGGCGGCTCTTTCTGATTCTTGGGCTGATACTGTTGGCATGTGGTGCACATTTCAACCATTTGTTCGATGTCTCTTGTCATTCCAGGCCAATACAGGTGATTCCTGGCATGAGCTTTTGTGCGCTGCATTCCTCGATGAGCACCGTTAAGCTTCTGTAGCATGACTGTTCTCCTTGTTTTGGGAATGATGATTCTGTCTCCTGCAAGCAGAACTCTGTTTTGTTCTGCTGCTGTGTCTCTGATTGACCAGTACTGATACAGTCTTGGGTTGAGCTGATTTCTCTGTTGTGGCCAACCTTTCCCGTGAACCTTGTAGCAGTTGTAATGTCATCTTTCTGTATTGCCTCGTTGAGATGTTTCAGCATGTCTTCATCAAGGGCGTCTGTTGCCTCCAGAGTGTAGATGATTTTCTCGTCTGTGACTtcatcagtctctgtgtgttgaCTCTCCACGACCGCTCGTGGCAGCGTATCGGCGAGCAGCATGTTTTTCCTAGGTGTGTAGGATACGTTCAGGTCCTACCTCTGCAGCTGGAGGAGCTTCCTCTGGAGTCTGGATGGTGCTATTCCCAGTGGCTTCTTGAGTATGGACTATAGCGCCTTGTGATTGGACTGTACGTTCACTTTCATCCCATACACATACTGGTGGAACCTTTTGGTAGAAAACATAATGGTTAATAGCTCCTATTCTACTTGTGCATTGACGCGTAGGCGATCGGTCGTCCCTCTTGTAGTAGACAGTAGACACGCCCCTACTCAGTCTTTGGATACGTTGGCCTGTATGACGAGTTGTTTCTGTGGATCAAAGAATTTCAGTGTTGGAGCAGGGATCAGAGCTGTTTTGAGCTTCTTCAGCACTTCCTGGAGCTCGTGCTGCCATTGCCAGGCCATGTCTTTGCGTAGCAGCTATCGTAGTGATGCTGTGAGTGATGCTTCATCAGGGATGTACTGTCAAATACTTTGTCATGCCCAGCAGTCATTGTAGTGCTGCTTTGTTAGCAGCTGGCTGCATTTCAGCTATTGCTCGCACCTTCCCTTCATCTGCTTTCACGCCATCTAGTGTAATTACGTGGCCCATGAACTTGACAGTGCTCACCTTGTACTTTATCTTCTCCTTGTTGAATGTCACGTTGACCTGCTCATCTCTTTCCATCACATGTTGTATCTTGTTATGTTCTTGCTCTGTGGCTACAGCGATGATCATGTCATCTGCAATGGTGTGAACAGCTTCGATGTCTCTGAATATGTCACAGTTGTGTTGCTGGAACACTTATTGGATGATTTGATCCTGCAGAGTAGGCATTTGACCCTGTATGGTCCCCATGGAGTGTTACATGTACACAGCAGTGAGGACTCTTTGATTAGCTTCACCTGCCAGTAGTCGTCCTTTTCAACCAAGATGATGAATATATTTCCAATCAGATTACTCAGCATGTCCTCTGTAGTTGGGATGGAGTAGTGTTTCCGGAGAACAGCTTTGTTCAGGTCGTGGGGATCCAAGCAAACTCGTAGTTTCCCAATCTTCTCTGTGACTGCATACCCTGCAGTGGGCTCTGTCACATGGTCTATCCTATGACATCAGCCTCCAGTGGCTGATTCAGTGATCTTTTTAGTCTGTCCATGACTGCCCATTGAATATTTCTGCAGCCATGTATGACAGGTGGGACGTCTGGGTTTACATGGATGTGATGTTCTCCAGGATTAGTTTGTCAGTTCAGTCATTTGCCTTGATGAGCCCTACCCAGCTAGCTAGTTCATGCTTGTGGCTAGAAACTTCAGTGAGAATTTGAAACTTGTCTGCCGAAGTCGGGACTTATCGGACTACAAAATTAACAGATGTGCTTTAGCTGCCTGTCACCCTGGCCTGATATTAGCTACAGTATCTAGTTACTTCCCTCTTAAGTTACTGCAGGACAGCAGTGCTCAGCAGGTGGGAATCAGGAGCGAAGGACACACTGTGCCCCGTGTTGTTGTGTTGCCGGCTTGCAGGGCAAACGCTCCCCTTTGAGCAGCAGTACTGTGACATCCAGATTCTAGATGGTGATCCAATACTGCAAGTTATTTCTCCCTCGCCCATCGAAATAAAGACTTTCTTTTACAAGTTTTAAATCGCACCATGCTATTGTTGCTGGCTAGCTAAGAAGGGTTCATCAGGACAATTTACTGAACCAAATCCATTCGACATAAGTCATCAATTTGGGCACCAGGCATGTCCATATAGCCTCTCCCCTTTAGCTTGGCAGCTGTTTTTATGTTAACTCCGTTGTTTGTGCTCGACAAAATTCTGAAACCGGACCATGTTGTGGATTCGTATGACTGGAGGACTCATTGACTAGCTGGCTACAACAACCTGGAGGTGGCAGAGTATCTCCAGAAGCAAAGGGCTAACATTAACGCACAGGACAAGGGAGGCCTCATCCGTTTGCATAATGCTGCCTAATACAGGGTCCGTCAACTCAAAGATTACATCAGGCTTTTGAAGACGTTTTACATGCTtttgtcaagtcaaccagcagttttgcctcagctcctgcttttcccagtttctccgacccttgcctgtcctgactcggagcccgcctgcctgaccactctgcctgccgaCCTGCAccattgccccacctctggattattgacctctgcctaccctgagcctgcctgccgtccggtacccacctctggtttactgagcCCTGCCTGTCTagtgcctgcccctgttggattattaaaccattgttaattcgTCATTGTCTGCATCTgcgtcttaccttcatacctgatacaGAATACCTACAGTGTGACCTTGTGGCCTAGGATATTTAACAGCTTAGGTGTCATCAGGCTTTAGAAGACATTGTGTGATTGTTGTGTTTACAAAACCGTACAGCACATACAATGGAAAAACACCCACAATGTGACCTTGTGGAAAGCCTAGCTATGTAACCGCTTGGATGTCATACATTTTGGGCAAGTCATTAGGTTAAATCatatcctctccccctcctttcctcgCTGTCACTTGAGGGAAAAATTGTATTCACCTTATTTGTTGGATATGTAACAATTATTTACTTAACAGTAAgatatttctgtcctgctaatgttgtgttgtatggtCTTCCCTCCACTCTAGCACCCTGCAGCTAGTCTGGGTGTTGAGGACATGGGTTCTACTAGAGATGGCTTGAAGCTGACAATTGATCTTTGTGATTAAAAACCTAAAAGCCGGCATTCTATAGACAAGATGTGGTGCGTGACTCGAGAGAGCCTGGAAGAGTTGAGAACAATGCCTCATCTTCCTGGCATCTATTAAACTAAGTAAAATACCATCCTGTGTAGATAACCAAGGTGGCTTATGGGAAGGTTAAATGACTAAGCAATCTTGGTATCAGCTATATAAAAACTGTGCTACGTCTGTAAAGGCTAGACTCTGTCAAGACTGGTGGGCTGACGGTCTCAtcattgcaataattaatcgatattaaataaagatgattgaaGAAATGGCcaagtctctcctgtcctctcttctacagcACGTGGACATTGCGGCCCTCCTGATCAAGTTCAACAACTGGGCCTTCACCCCTCTCCACGAGGTGGCTCAGAAGGGCTGTAATCTGCTGTGTGCTCTACTGCTGGCCCACAGAACTGACCCTATCATGAAGAAGCAGGAGAGACAGACCACCTGATCTGGCCACGATACCCATCCTTTCTCTGCTAGTGCTAACAGTAGATAACATGATTGTTACGTACACCTCTTCctagagggaacgcaacaccctgctacaactcaactccccgtggagtgaaaggggtatgggactgtaggtttGAGTAGGAATGACAAAGGCTGAGaatggtaccgtttacaaggaattTATTCTGTCACATGGTAATTTttgggaaaaggggctggatggaaccaaagcgaagaaagtaaatatcaaatccccctctcctaccttacctgcctacccactacttaacttagcaccacctggtgcgctaaccaaaatacaaggggtggtccgcccaggtcttacctagtgggCAAAGACAGTGAATACTACGGGTTATGTATGCCAGCAGGCCTCTttcctaagcactccctaggtgccttccccttccccttcccccctgggaacaaatgaaacagaataatgCAAACTACTTCACAACAAAAACTGAGAAAAAACTCAAGACATTAAagaaaccctctctctctctgagcaacaaACTAACACATAACAATCAGCTCTCTCAGCAACAACTAACATAGTACATACTAAATCTCTTTCTGAGAAACAACCAACATATGATATAACCCTCAGCTCTCTTCTGAGCAGCAGAACACTGGCTTATATAGCTGGAGAAGGAGTCTAATGGTATACACCTGTAtcctgacgagggggcggggtcagctctccaatcatcattggggccgaccaatcagctgcttttGGGAATTTCATGAAGCCATcctgcaacacacacatacaaaaccacaacacagaaactggggaacgtaacaaagATGTTAAATGAAAAGTGTTACTATCAGTATCATATGTTGATTTTCAACATAAACAAGAGCTGTCATTAGTTTTTTGTTCAAAATGGTAGATATAGTGAATGTATGCATGTGTTATATTTTTCTAGTTACACAACTGTCTGACAAGGACGTAGTCTGTTCATAATAATTcccatcaaatatattttgacacACATGGCTGGGGAAACCCCTTATCACCCAGTAACTCTCCCTCTTACCgcatcctcctccttcctcaggcTGATGATATCCGTACCCTGTTGATGTACACAATGCCCTCAGACGCAGAGAAGAGAGATCACCAGTTCATCAAACTCTCCATTCTCGGGACAACATACATTGCTCGATCAGTACATACATTGCTCGATTGGTACTTGATTGGCCCATTTGCCACCTAGCCAAACAGACTGATATTTTAATGCAGAAATCCATGACCTATTGTATTTGAACATTTTGTGTGTATTTCTTAGAAGCTCGCAAGCTAGTGGCGGGCTGTTCTGAGGTTCAAGCAGtttaattgtttttaatatctgCTTATAATCAGTTATCAGTTAATACGCATGAAAAGATTAGCTGTGGAATTTTCCACTCCATTAGGATATTATTGTCTTGTAACTCATGTAAAGTGGAGTGCCTCCTCCACCAGGCCTTTAGGGTTGCAATGTTAAATGTAAAACTCTCTTCTCTTATAAGCTGAGGTGAACCAATGGACAGTAGACCAGCAGCAGTCAGTATGTAACCTGACGCAACTGGAGGTCATGATGGTATTTGTTTAGAACAATAAAGAATACAAGTAGTTGGCCACTACAATGCAGAAAACTATATATTTACAGTGGCTCCAGTTCCAAACACAGTAGTTAAGTGCTACTGGAGGTCTTTATGGTGTTGAAGAACTCTTGGAAGTGATCCAGGCTGAGCTTGTGGGTGAGCTTGTTGTTCAGTAGGTGGGGGAGTTGGGCTGTACCAGGCTGTGGTTTGAGCTTGACGAGGCCCTCCCAGCAAGGACACGTAGTCTTATGCCTCAAACAGGAAGGAGTAGAGTACACAGTATTCATCATGGAAATGACTTGGGTGCCATATATACGGAACTGTGTGGAGTCTTGTGCAACTGTGTTGACTGCACAGAGCTACAGAAGAAAACAAGGGAGGAGAACTATTAATTGCCTTATCGCTTTACAACTTAGGCCCATAACCTATAGTTAATTAAATTGGTTTTGAGTACCACCTTGGCTCATATATCCAGCAGGGCCCTTTCTGAAATGAGATGGGATAAAACTATTAGTTGTTTTAGCGGTGTAATGGCTCAAACTGTATTGTCCCCAGATGTTCATTTTGTTACATGTAGGGCTAAAATAATACAGAATAATTGAGTTGTTTATTGCACCGCTCTCTGCTTGACACACTGCAAAGTGGGTCAACTATTGTATTCATCTCCTTTGATTTGATATATGAAAATGTCtccatgtttttatttgtttagtTTTGTCAGGTGTACCTCAGTTGGTTGAACATGTTGCTAGCAATGCCAgagttgtgggtttgagtccGGCCTGGACAGTATAACAGATTTAGCTGGGCTTCTCCTCAATTACTCTGCAGCGCCGGTCGAGGGCTTCCAGGTGTAAGATTAACAAAACACGGCTATTGTGAACAATGTGCTGGCCATATTTGTTCGAGCTTTGGGTGGGCACTGGATTAGGCATCCTCACATAAAACAAAAGACGATAGCCCTGGCCTATTCCTGCGTGACAGAGTTCATCACACCCCGTTGGGAAAGAGTTTTTTAGATGCCATACACTATTGTCTTTAACAGTTGTTATAGAGGCAGCACATAATAGGCCAGGGCTTTATGTAAGGAATGAATATGATTGAACCCATTCTTACTCTGATGCAGCACTTATTGCATGTTTTGAATAGCAGGACAGAAATCAAGTACCTCATGCTGTACTCATGTTGAAAAGACAGGTCAAAGAGATCTCCTGGCAGGGGTTAGAAAGGATGGCCCCCCTACAGGTACAGCAAACGCTATGTTGGTTTGACTTCCCTGCAGTGAACAATGCTGCCCCCCAGTCCAGGTAATGCCAATGGCTTGTATGTGACAGTTATTTCAGTGGCTCTGACAATACATTATATTGAGCATCTTATAGAATCCTTGAGTTGGTATTATACTACTATTATATTATACTACTTATATGAATATTTTTTATCAAATGCTGTCTATCCCTTAGAATCTACTAACATGTTATACAAGGCAACTTTactgattaattgattgattaattgggACAAGGCTCAAATTTAAAAAGACATGTCATATACTGCATAACTTTTATCTGCTTTAGATTGGCATATGTTGACTTTGGAGGAAGGTGGTTGGATGGATTCAGATGCTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU499145 lncRNA upstream 175567 76471833 ~ 76472053 (+) True G440955
TU499141 lncRNA upstream 177908 76469483 ~ 76469712 (+) True G440951
TU499120 lncRNA upstream 194232 76453109 ~ 76453388 (+) True G440931
TU499119 lncRNA upstream 194669 76452286 ~ 76452951 (+) True G440930
TU499118 lncRNA upstream 195388 76451855 ~ 76452232 (+) True G440929
TU499304 lncRNA downstream 34100 76690998 ~ 76691326 (+) True G441106
TU499312 lncRNA downstream 40321 76697219 ~ 76697420 (+) True G441114
TU499313 lncRNA downstream 40559 76697457 ~ 76697660 (+) True G441115
TU499314 lncRNA downstream 41436 76698334 ~ 76698605 (+) True G441116
TU499308 lncRNA downstream 47269 76704167 ~ 76704526 (+) True G441110
XM_036978428.1 mRNA upstream 8142 76609969 ~ 76639478 (+) False LOC110524593
XM_036978432.1 mRNA upstream 8142 76609969 ~ 76639478 (+) False LOC110524593
XM_036978431.1 mRNA upstream 8142 76609979 ~ 76639478 (+) False LOC110524593
XM_036978430.1 mRNA upstream 8142 76617633 ~ 76639478 (+) False LOC110524593
XM_036978429.1 mRNA upstream 8142 76617636 ~ 76639478 (+) True LOC110524593
XM_021604400.2 mRNA downstream 6966 76663864 ~ 76684035 (+) False LOC110524592
XM_021604401.2 mRNA downstream 6966 76663864 ~ 76684035 (+) False LOC110524592
XM_021604404.2 mRNA downstream 6967 76663865 ~ 76684035 (+) True LOC110524592
XM_021604399.2 mRNA downstream 36632 76693530 ~ 76704137 (+) True LOC110524591
XR_005051590.1 mRNA downstream 60101 76716999 ~ 76721132 (+) True LOC118964533
TU497242 other upstream 1469333 75171304 ~ 75178287 (+) True LOC110524571
TU496740 other upstream 1871151 74772009 ~ 74776469 (+) True G438719
TU496738 other upstream 1877454 74763204 ~ 74770166 (+) True LOC110524560
TU495122 other upstream 3152536 73456301 ~ 73495084 (+) True G437327
TU494306 other upstream 3651885 72995499 ~ 72995735 (+) True G436588
TU500137 other downstream 611314 77268212 ~ 77268766 (+) True G441903
TU500530 other downstream 901432 77558330 ~ 77583227 (+) True G442273
TU501262 other downstream 1588941 78245839 ~ 78258456 (+) False LOC110524622
TU501263 other downstream 1588941 78245839 ~ 78258456 (+) False LOC110524622
TU501264 other downstream 1588941 78245839 ~ 78258456 (+) False LOC110524622

Expression Profile


XR_002473614.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XR_002473614.2 Expression in each Bioproject

Bar chart with 19 bars.
XR_002473614.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.