RNA id: XM_021604409.2


Basic Information

Item Value
RNA id XM_021604409.2
length 1854
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110524596
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76991991 ~ 76996276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGTATAGGAAGTCAATGTAGAGCAACACTAGAACGATTACAAGCAAAGGGGGAGCGTGATGTCCAGGAGTTATCCCTCCGAATCTCCACACCTCAACTTAGAGAGAAAGTTCAATAGCCATAACAAAAGGACGTGGACTACACAGACAGACCCACTGCTCATTTACAATCGAATGTAACAACATCTTCTTGGACCGTATTTTTTTCTTACCATTTTCTAGAAATATAAAACGTGGATTTCGGCTTTGTTTATTTTCCCGACCATTTCAACTCATAAATTCGTTTGACTTTTAGGTGTACATGTGCCTCGGTTTGTGTTATATTATAATTTTCATCGGTTTTGAATAAAATGGAGCATATAACCGGTGTCCTAATGTTGTTATGAAGACTTAAATCTCCATATATTTTGCTTTTCTTACTATGGAATCGTCCAGCGGCTCTAACTTTGGAATAGACACTATTTTATCCAACCCTACTAATTCTGTTAACCCTGCGCTAATGAACGGAGATTTCCGCCTCGGTGACAGCAGGACAGCGGATTTCAGTCGGAGCCAGGTCACCCCGTCCCCGTCATGTTCGGACATAGATACGGTGGGAACGGCCCCTTCTTCCCCAATCTCCGTCACCATGGAGCACGCCGAGCCGCATCTGCTCCAAGACAGCTTaccgcaccaccaccaccaccaccaccacctgcagCCAGGGAGTTTGCAGCTATCGCCTCAGCCACAgcagctaggggctggagccggTTGTGCCCCCAGGACTGCCACCTCTTCGTTTTTAATCAAAGACATTTTAGGCGACAGTAAACCTCTAGCAGCGTGCGCACCTTACAGCACCAGCGTACCGTCACCCCATCACATCCCCAAACCAGAGAGTGCCAGGGACAGTGGGGATGGCTTCAGGGCCAAGTTGGAACAAGATGAAAACAGGAGCAAGTTGGACAAAAGAGAGGATATGGAAATGAAATGCAacgGAACAAAAGAAGAGAATGAACGGGAAATTTCAAGTAGCAGAGATAGTCCTCAATCACGGTCAAAAAAACCTCGCAAAGCACGGACCGCCTTTTCAGACCACCAACTCAACCAGTTAGAGCGAAGCTTCGAGCGCCAAAAATACCTCAGCGTGCAGGATCGCATGGACCTCGCCGCAGCACTCAACCTGACCGACACACAGGTGAAAACCTGGTACCAAAACCGACGGACGAAGTGGAAAAGACAGACAGCGGTCGGATTAGAGCTACTGGCTGAAGCCGGAAATTATTCCGCCTTACAAAGAATGTTCCCGTCGCCCTATTTCTACCACCCGAGCTTGTTGGGTACCATGGACAGCACGACAGCAGCCGCAGCAGCCGCAGCAATGTACAGTAGTATGTACCGGACTCCGCAGCAACCACATCCCGGTCTCCAGAGACCCCTTGTCCCGAGAGTACTCATCCATGGCCTTGGGCCGGGGGGCCAACCGGCATTGAACCCGCTGGGTAACCCCATGCCCGGCACGCAGCATCAGCGGTAGAAACTAGAACAAGACGATTCCTGTCAGAAAAACTGTTTTAACCACATTTGATGTGAGTAACTGCGTTGAACGATGAACAATACATTTGAAGATGACAATATATGACAGACAATTTTACAGAAGGAGAAGGAGGTAATATTTAATGACTGAGAGACAGTTCTGACGTAACCACGAACTGCCTGCAGCATCGAGTCGAGGCCATGACAGAAAAAGGACTGTTCATATGtatgattgtttgtttgttttttgtacaAATTCACTTATACTAGCAAATAAACTTATAAAGTTTATTAGATGGAGAAAAGGGTTGAATAAAGACGGAATGATACTAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09360 BARHL; BarH-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU499815 lncRNA downstream 395 76991394 ~ 76991596 (-) True G441595
TU499813 lncRNA downstream 1630 76990155 ~ 76990361 (-) True G441593
TU499811 lncRNA downstream 4182 76987316 ~ 76987809 (-) True G441591
TU499805 lncRNA downstream 4970 76986697 ~ 76987021 (-) True G441585
TU499788 lncRNA downstream 18332 76973433 ~ 76973659 (-) True G441568
TU499828 lncRNA upstream 2612 76998888 ~ 76999109 (-) True G441607
TU499831 lncRNA upstream 5119 77001395 ~ 77001834 (-) True G441610
TU499852 lncRNA upstream 16733 77013009 ~ 77020135 (-) True G441629
TU499854 lncRNA upstream 20476 77016752 ~ 77024024 (-) True G441631
TU499856 lncRNA upstream 21750 77018026 ~ 77025180 (-) True G441633
XM_021604396.2 mRNA downstream 403011 76587005 ~ 76588980 (-) True glrx2
XM_021604397.2 mRNA downstream 403014 76587005 ~ 76588977 (-) False glrx2
XM_021604395.2 mRNA downstream 403084 76587005 ~ 76588907 (-) False glrx2
XM_021604398.2 mRNA downstream 403130 76587005 ~ 76588861 (-) False glrx2
XM_021604394.2 mRNA downstream 403543 76587005 ~ 76588448 (-) False glrx2
XM_021604411.2 mRNA upstream 185638 77181914 ~ 77215782 (-) False LOC110524597
XM_021604410.2 mRNA upstream 185639 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA upstream 186773 77183049 ~ 77215911 (-) True LOC110524597
XM_021604412.2 mRNA upstream 280629 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA upstream 280629 77276905 ~ 77402910 (-) True LOC110524600
TU499702 other downstream 89220 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 401621 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1416422 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 1726588 75263473 ~ 75265403 (-) True G439594
TU497119 other downstream 2028295 74963460 ~ 74963696 (-) True LOC110523004
TU499853 other upstream 17723 77013999 ~ 77021375 (-) True G441630
TU500354 other upstream 410466 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 627023 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 1085469 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1968355 78964631 ~ 78966029 (-) True G444001

Expression Profile