RNA id: XM_021604412.2


Basic Information

Item Value
RNA id XM_021604412.2
length 3821
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110524600
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77276905 ~ 77402910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCCTCAAAATGTAGTGCCTCGTGAAAACGGAGATAGGTATTTAAAACGTTTAAGCAATAGTAGTGGACTCACTATTCATAAACTCGGCAATTTCTGTAACCTGACATCTAACGTTGTTTTCCAAGGACGTGGAGGGGGTTTTCCAGGAAAGGATACATATCGCATCCATTCGAACCACTGCAAGGCAAGCAAGCTACAATTTACAACAAAGTTTACTTTGAGATTCCTGGATATTCTGCATGCAGGAGATCCTGTGAGGTTTctctctactgactgactgtgtggtgGTAGAAGGGTTGTCCTTGTGAAGAACCAGGAGGAAGGAAGGCCGTCCAGTGGATACATCCTGTCCTCTTCTGGATAAGCTGTAGGCCAGTTCTACTACAGTATAACTGCAGCATTATGATGCCAGACAGACCCATTTTACCCCTGTTTCTCCTGGCGTTCTGCTGCTCAGCATTTGCAGGTCCGTTGTCTCGTAGCCCGTGTGAGCTGCTGCCAATAGGTGTAGGCCACCCGGTGCAGGCTCTGCTGAAGAGCTTCACGGCCCTGTCAGGCTGTGCCTCCCGTGGAACCACGGGTCTACCACAGGAGGTTCACATCATCAACCTGAGGGGCAGCAGCCCTGAGGGGTCAAACAGCACACATCCAGAGGTGGAGCTGCATCTGAAGCCCATCCAGTCCCTGCTGGTTCACCAGAAGCCCCTGGTGTTTGTGCTGAACTCCCCCCAGCCTGTGGTCTGGgacatcaggacagagaaacTAGCCCTAGGCATTAAACACATCTTCCATgtaTCTGGGGGATCTGATGTCCACTTCCCTCCAGGGAACTTCTCCCTCCACTGTCATGTTCAGAAGGAGGTACTTCCCCATGGCAACGAGCACCTCCTCAACTGGGCCACCAAGAAGTACAGAGCCGTTACCTCCTTCTCCGAACTCAAGATTGCCCTGGACATCTACATCAAAGTGGGAGAAGACCCAGTGTTCTCCGATACTTGCAAGATCGACAACAAGTTCCTCTCTCTGAACTACCTTGCTGGCTACGTAGAGTCCCAGGCCTCTAAAGGCTGTGTCCTGTCTGGACCAGACCAGGACCAAGAGGTCCACATCATCGAGCTGCAAGCACCCAACTCTAGTAGTGCGTTCCAGGTGGATGTGATCGTTGATCTGAGGCCGTTGGGGGCAGATGTTCTGTTGCCTCGTGACATCGTGCTGCTGCTGAAGTGTCAGAAGTCTGTCAACTGGGTCATCAAGGCTCACAGCATCAGCGGGAAACTGAATGTAGTGACGCCAGATACCATCAGTCTGAGCCCCAACACAGAGAGGCTGATGGAGGTGTCTAGGACCCCTAAGCACCACCTCCCGTCTGGCTCTCAGGCCCTGATCAAGTGGGCAGAGGATCATGGTTACAGACCGGTCACCACCTACACCCACACACCTGTAGCTAACACCTTTAACCTGAGGCTCAGGGAGCCAGATGTGGTGGATCCCCTGGATTCCATGTTCCCTCCAGAACTCTCCATCTTACGGGACACCAACCCCATTCTCTCTGGTGGTCAGGGGGGTGCTGCCCCACACTCCAGTGGCCTGCCCTTCACCTTCCCCTTGCCCCCGCTCATGGAGCAGGGCCTGCACTACCtgtccctgcccccccccctggATGACCGGCCTTGGCTGGGAGGGGAGCTGGGTGGGGAGCCTGAGGAGCAGCAGGGGACCCTCAGTGTTGGTCTCAGTGTTCAGTGTGAGGAGAGCAGGATAGTGGTCTGCATCGACCGAGAGAGTCTGCAGGCCAACGGTTACGCTAATGTCAACCTGACTCTTCAAGACCCAGAATGCAAAGCAACGGTCAACTCCACCCACTACACGTTGGTGACCCCATTGGAGGGCTGTCAGACCACCAAGTACCCCATGCACCCCGGTCCTATGGTCCTCTACATCAACTCTATCCTGATAAGTCACGATGAGCCTAAGGATGGGAGTGGTGTTCCCCTGGATTACGATGATCTAGAGTCTGGAGACGTGACATTCCCTGGGGAGACAGAGGCACTGGAGAGGGCTGCTTTCCTGGAGCACACCACGGGGCCTGATCACAGGTCCTCCATTCTGTTCAACTGCACCTACAGGAAGAACCAGGACACTCTAGGAGGATCAGGATCATCAGGATCGTTCCCTCGTATTGCCCCAGCAGCAAAGGAACTGCTCAGCACCGACGTCATGGTTAACATGGAGCTGTACAACACCCATCTCTTCCGTTATCCGTCTACCCAGGCCTTCCATACCGTCTCCAAAAATAAACAGGTCTTCGTAGAGATTGGAGCCTTCAAAGTCGACCCAGATCTTGGCTTCATGATCCAGACCTGCTTCATCTCTGCCAACTCAAACCCCAACATCGCGTCAGACTATACCCTGATCGAGAATATCTGCCCTACAGACGACACCGTCAAATACTACAGTCAGAGAGACCTACCTATCTCCCACTCCCAGACCGACAACAAGAGGTTCAGCTTCACCTTCAACTCACACTTCAATGAATCATTGCTCTTCCTGCACTGTGAAATGTCCGTTTGCTCTAAGAGACCCCACAATAACCAGGGACTGGCAATGTGTATCCAACCGAACGAGGCTTGTACGTCTGTCAACGGAGAGATCATCCTAGCCATGATGATGAACACCAGGACTTCTACCAAGACCCTAGTGGTGGTAGATGAAcatgacacagaggaggaggaacctTTTCATCCCACCCTCACGGCATCACAAAACCCTGCTGACCCCCTAGGGGAAAacatCTTGTATGTGTTGGACACTCCAACCGTGGTTGGGATCGCCTTCGCTGCATTTGTGATCGGTGCCCTGTTGACCGGAGCCCTGTGGTTCATCTACTCTCATACAGGTGATACAGCTGGACAACAGCAGCCCCTGAAGCCCCAACCCCCACCCTCAGAGAACAGCAGTGCGGCCCACAGTATTGGCAGCACACAAAGCACGCCCTGTTCAAGCAGCAGTACAGCATAGCCCAGAGGCCAGGCCAAGGCCATTGGACTGGAGCCCGACGGGGAGCACCCTACCCCCCTGCAGGGCTACAGGAAGGGCTACACAGGTCACAGAGAACTGGGTTTGTTGACACTTGTTTCCCCTCTGGATGAAAGGAATTATTTTGGGTTGCTTTGTGAAAACAAAGAAGAAGGATGATTTACTAAAGAAGAAAATAAGAATAAAAGGATTGTTTTTTTAAAGGATTTTGTAAGATACTAAAAAACAATAAGACCCGTTAATGTCCCTGGTTAATTCAATTTATTTCAACACAAGTCATTAAGGCTGTGTGACAGAACtgctgtactacaaggactggtCTGAGAGCAAAACAGTACTAGGGTTGTTCCACCAATtcagtgccttttgagaagtgtaacctGGTCCAAAAATAGttgatttcacctcattttaacattctgtcataacgAGCACATGTTCAACATCATAAAACACACATTTTGTAATCTCAGgaggttaaatttaaaaaatgactatagtaaatgccaaataaagtaacaggattgacaaaacaccaaaaatatccaaaaagagtagaaccagctaaCCTGCTTTTCACTATGATTTACTTAttggatgttcaatgtttcttttgaaaaaaatattttaaaaggaaTAGTTTTACCACATTACTACGAGAGTTgagttcacgtaacagggttgaccataaaatgagggacagacgtacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttattattttctacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500260 lncRNA downstream 857 77275845 ~ 77276048 (-) True G442023
TU500259 lncRNA downstream 2908 77272968 ~ 77273997 (-) True G442022
TU500256 lncRNA downstream 4156 77271489 ~ 77272749 (-) True G442021
TU500255 lncRNA downstream 5256 77269947 ~ 77271649 (-) False G442021
TU500257 lncRNA downstream 5692 77269860 ~ 77271213 (-) False G442021
TU500355 lncRNA upstream 7377 77410287 ~ 77410653 (-) True G442116
TU500376 lncRNA upstream 19310 77422220 ~ 77422477 (-) True G442137
TU500380 lncRNA upstream 20442 77423352 ~ 77423695 (-) True G442141
TU500426 lncRNA upstream 52002 77454912 ~ 77455575 (-) True G442173
TU500445 lncRNA upstream 66708 77469618 ~ 77469838 (-) True G442191
XM_021604410.2 mRNA downstream 60994 77181915 ~ 77215911 (-) False LOC110524597
XR_002473616.2 mRNA downstream 60994 77183049 ~ 77215911 (-) True LOC110524597
XM_021604411.2 mRNA downstream 61123 77181914 ~ 77215782 (-) False LOC110524597
XM_021604409.2 mRNA downstream 280629 76991991 ~ 76996276 (-) True LOC110524596
XM_021604396.2 mRNA downstream 687925 76587005 ~ 76588980 (-) True glrx2
XM_021604427.2 mRNA upstream 112208 77515118 ~ 77527861 (-) True LOC110524605
XM_021604430.2 mRNA upstream 145950 77548860 ~ 77556868 (-) False LOC110524607
XM_036978448.1 mRNA upstream 155412 77558322 ~ 77594883 (-) False LOC110524608
XM_036978447.1 mRNA upstream 155412 77558322 ~ 77600103 (-) False LOC110524608
XM_021604431.2 mRNA upstream 155412 77558322 ~ 77617708 (-) False LOC110524608
TU499853 other downstream 255530 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 374134 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 686535 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1701336 75571249 ~ 75575569 (-) True G439788
TU497719 other downstream 2011502 75263473 ~ 75265403 (-) True G439594
TU500354 other upstream 3832 77406742 ~ 77407135 (-) True G442115
TU500657 other upstream 220389 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 678835 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1561721 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1820230 79223140 ~ 79237461 (-) False LOC110524635

Expression Profile