RNA id: TU501027


Basic Information

Item Value
RNA id TU501027
length 2367
lncRNA type sense_over
GC content 0.41
exon number 3
gene id znf648
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77914925 ~ 77939001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGCCGACAGGAGGATGCTTATGGTTTGCCTACGGGGAGATAGGAGGACGTTGTCGAGGCACTGCCAAGGAGGTGAGTTCAGGGAAAATCCCTTTTCAGCCTCAAGCCACGTTCACCACCTTTATAATATCCAGTATGGCTGAAGAAATGCCTTCATGGACCTCAGAAAGgtaaccatggttgacagaggaagaacaatgattccaagcaccaccctccttttgaagcttccagtctgttattcgaactcaatcagcatgacagagtgatctccagccttgtcctcatcaacactcacatctgtgttaatgagagaatcactgacatgatgacagctggtccttttgtggcagggctgaaatgcagtggaaatgtttttgggggggattcagttcatttgcatggcaaagatggacttgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattcatatttgtgtcattgtcaacacttttggccacgactgtacacatgAGCACCTCTAAGAAGAACACCTAGTAGCCTATCAAGTgcagtgtgcatcccaaatggcacctatgggtcctggtcaaaaataatgtactatataggaaataggttgCTTCTTGGCAAGCACACCTAGTAGCATATGAAGTGGAGATCAGTCATGAGGGTGCAGTTCTAAGGTTAATCATATGGGAACAATGTGAATCTTTGAAAGTACAATATGGAATGTATAACATTTTTGTTTGTTATGGATTTGGCaggttttgtttttgtattttttacctGTGTTTTTGGTGTCTTTGATGAAGAGTATGGACACCTTGATTGCAAAGGACTGCCGAATAACATAATGCAGAAAGCACCATCCTTTTCTGAAAATATAGACCAGCAAGATTGAATTCAATGGACGTCCTTTGAAACACTTTAAAGCTCACAGCAGGGACCTTAAATGAGTTTGAAAGTCCAGTAATTTGTCTTACTAAGACCAGGTGATCCGTTGTGAAAATTGGTCCCCCAATACCTCTGTAGCACAGGAGGCTGCTAACGGGAGAACGGCTctcaataatggctggaatggagtgaatggaatggtatcaaacacatggaaaccatgtatttaatgtgttcgataccattccatttattccctTCCAGCTATTACTATGAacacgtcctccccaattaaggtgccactcgCTGCCTGTGCTCTGTAGTTAACCTTAAGTCTTACTACAATCCACAACTTACTCAATAATACAGTTTTGATACCATCAGATACCATCAGTGCCATCCAGTCACATGATACTATACAGTAAGAGTCTCACTCACTATTTCTATGCAATAATCTAGAGATTGGGTTGAATGAAAACCAGAGTGGAGTCATTCAGAGCTGCTGTCCGACTGACAGGCTAATGGTCATTAGGAGTTCACATGATACTACAAAAGTGCTGTTAATACATGGTGCTAACAAGCCCCCTTTGTCCTGATTGTGTTCACATCCTGAATGTACCCACATTTGTAGACGATCaaaagacacattgtgatctgattgtgatcttCCTGACCACCTGCTGAGGTAGACAGGCACATAGccgtgggaagtaggggtgctgagggtgccgCAGCACCCCCTGATTTCTTCtccacaaaagtagtgcactgggcctttactagtacgATATTAACGGACTTATATAGCCGTCTGTAGTGCAGCACCCCCGCCCTCAAACATCTTCCCACGTCCATGGACAGGCATgcattgtgtctggatatcttacaaATGTAGACATATCTAGACAGTGAAACCATTTGAATCATAATTATCCCACcttctaaaatcattgacaggtggcACCATTGACTTATGACATCAatttatgttttaaaataaatacatttatattaTTTTTGAAAGAATATTCATTAAATAATTGGATGCATGTTAGCGCCCGGTATAAACAaggctctggtcactagtgtgTTCACTTCCTAGTGTGTTCACTTCCTAGTGTGTTCTCTTCCTAGTGTGGATACATTTGTGAGAAAAAATCTTGACACGAGGCATCCTTGCCCTCTTGCCCAGGGTGGCACATTTTATGTTTGTTTATATGTGTCAAGAAATATTGTGTGAATATTTGCTAGATGTCAGAAAAATGTAGAATGTTATTTCAGGTGTCAAATTGATATTCTATTTGAAGACCAAAGGTCTACCGAATATTGCAGGTTTGAAAGAATATATAATATTTACTGTACTGTCTGCAATGGAGCTGATTTCTGTAGCTGTCTGCTGCAGTAACACATAGATGTTATGTGTATAATTGGATTGGAGTAAAAGAGAACAATAATTGAAATAAAAGAGAATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501019 lncRNA downstream 6060 77903116 ~ 77908865 (-) True G442664
TU501021 lncRNA downstream 12597 77901782 ~ 77902328 (-) True G442666
TU501002 lncRNA downstream 32974 77881225 ~ 77881951 (-) False G442649
TU501003 lncRNA downstream 32974 77881225 ~ 77881951 (-) True G442649
TU500996 lncRNA downstream 43870 77870368 ~ 77871055 (-) True G442644
TU501040 lncRNA upstream 4342 77943273 ~ 77943849 (-) True G442676
TU501044 lncRNA upstream 14144 77953075 ~ 77953321 (-) True G442680
TU501060 lncRNA upstream 38712 77977643 ~ 77977982 (-) True G442696
TU501067 lncRNA upstream 52244 77991175 ~ 77991411 (-) True G442703
TU501077 lncRNA upstream 65478 78004409 ~ 78004634 (-) True G442713
XM_021604443.2 mRNA downstream 40082 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 272776 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 275131 77627457 ~ 77639794 (-) False LOC110524609
XM_021604432.2 mRNA downstream 297214 77558322 ~ 77617711 (-) True LOC110524608
XM_036978449.1 mRNA downstream 297217 77558322 ~ 77617708 (-) False LOC110524608
XM_021604447.2 mRNA upstream 44813 77983744 ~ 77987655 (-) True glulb
XM_021604453.2 mRNA upstream 300837 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 444074 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 1280222 79219153 ~ 79226639 (-) False LOC110524635
LOC118964722 mRNA upstream 1304316 79243247 ~ 79282591 (-) True LOC118964722
TU500657 other downstream 287711 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 507790 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 893550 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 1012154 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1324555 76586458 ~ 76590370 (-) True G441168
TU501172 other upstream 142814 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1025700 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1284209 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1285072 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1792056 79730987 ~ 79731536 (-) True G444691

Expression Profile