RNA id: XM_021604447.2


Basic Information

Item Value
RNA id XM_021604447.2
length 1877
RNA type mRNA
GC content 0.48
exon number 7
gene id glulb
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77983744 ~ 77987655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCCAATCCGAGGCAAGGCGATCCCATCTCCCTTTTATAAATcggactgtttttttttttgttgttgtaggcGAATGAAAGGTAACCATTTGGGATTGCACAGGACATTTACTGAAGGCTGTACCAGGGTTTTAATCCCATTCTTTACTTGCTATAAGTTTAAGGCTCAGTGAAAATGGCCACTTCAGAGAGTGCCAGCTTGAGTAAAGCTGTGAAGCAGCAGTATATGGATCTTCCTCAGGGAGACAAGGTTCAGGCCATGTACATCTGGATAGATGGGACTGGAGAGGGGCTCCGCTGCAAGACCAGAACTCTGGATTCCGAACCCAAGGCCATTGATGATCTTCCAGAGTGGAACTTTGATGGTTCCAGTACGTACCAGTCAGAGGGCTCTAACAGCGACATGTATCTGATCCCTGCTGCTATGTTCAGAGACCCCTTCAGGAAAGACCCCAACAAACTGGTCCTGTGTCAAGTGCTCAAATACAACCGCAAGCCTGCAGaaACCAATCTCCGGCGGATGTGTAAGAAGATCATGGAGATGGTAGAGAACCAGGTCCCTTGGTTTGGTATGGAACAGGAATACACCATCCTGGGCACAGACGGACATCCTTTTGGTTGGCCTTCTAACGGCTTCCCTGGTCCCCAAGGTCCCTACTACTGTGGAGTAGGCGCAGACAAGGCGTATGGTAGAGACATCGTAGAAGCCCACTACAGGGCCTGTCTTTATGCCGGGGTTCAGATATGTGGCACCAATGCTGAAGTCATGCCAGCTCAGTGGGAGTTCCAGGTGGGACCTTGTGAAGGGATCAACATGGGAGACCACCTCTGGGCAGCTCGGTTCATCCTGCACCGGGTCTGTGAGGACTTTGGTGTAGTGGCCTCATTTGACCCCAAGCCCATCCCTGGGAACTGGAATGGTGCTGGCTGCCATACCAACTTCAGCACCAAGGAGATGAGAGAAGATGGTGGGTTGAGGGCCATTGAGGAGTCGATCGAGAAGCTGGGAAAGAGACACCGTTACCACATCTGTGCCTACGACCCCAAAGGGGGGCTGGACAACGCGCGCCGGTTGACCGGTCACCACGAAACGTCCAACATCCATGAGTTCTCAGCCGGTGTGGCGAACCGCGGTGCCAGCATCCGCATCCCCCGCTCAGTGGGTCAGGACAAGAAGGGCTACTTCGAGGACCGCCGCCCGTCAGCTAACTGCGACCCATATGCAGTCACAGAAGCCATGATACGCACATGTTTGCTCAGTGAAGTGGGGGAGGAGCCTACAGAATACAGCAAATAAACTAGTTACTCTGTTGGACTGAAAtaatcccctttctctcctcttgcGCTACGCCTCATGAAGTGTCATTTCCAGTACTGTTTTGTCTGTGGCTTTGGAAACCCCTTGTATAAATTGCAAATCTTGACCATCCATTTAGGGCTTACTTTTTAGCcattaaaaaatattttacttGAGATGAATGAGTATTGAGTATGATTGATGTATTCTGCTGTGTGTTCAGGGTAGCGTAGTCCCTACCTTTTTTAGCTTGATCACTGCCAATATTGCCATAAAATTGATGCTAAAGAATGATTCCAGACATGTCAGTCGAGGGTGAAATGTTTCCTATGTATAGGTCTAGTTTTGTGTATCAATTTGCGACTCATGTTTAACATGATATACTAACCAAGATGCTGTAGATTTATGACTATGCCATCCATGTGTGGTCTGGCTCGTGTGGTACACAAACCCAAAAGGATCCAAGGTGCATCTGTGTTTTTATACATGTGTGGATCTCTATTGTCTACCATTTAGTAGAAGTTGTATCCAGAACCCATTTTCTTATTTGGaacattaaaaaatattttttaatctgA

Function

GO:

id name namespace
GO:0006542 glutamine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004356 glutamate-ammonia ligase activity molecular_function

KEGG:

id description
K01915 glnA, GLUL; glutamine synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501060 lncRNA downstream 5762 77977643 ~ 77977982 (-) True G442696
TU501044 lncRNA downstream 30423 77953075 ~ 77953321 (-) True G442680
TU501040 lncRNA downstream 39895 77943273 ~ 77943849 (-) True G442676
TU501027 lncRNA downstream 44813 77914925 ~ 77938931 (-) True znf648
TU501019 lncRNA downstream 74879 77903116 ~ 77908865 (-) True G442664
TU501067 lncRNA upstream 3520 77991175 ~ 77991411 (-) True G442703
TU501077 lncRNA upstream 16754 78004409 ~ 78004634 (-) True G442713
TU501078 lncRNA upstream 17105 78004760 ~ 78004999 (-) True G442714
TU501120 lncRNA upstream 49142 78036797 ~ 78037009 (-) True G442755
TU501124 lncRNA upstream 50666 78038321 ~ 78038597 (-) True G442759
XM_021604446.2 mRNA downstream 44743 77925215 ~ 77939001 (-) False znf648
XM_021604443.2 mRNA downstream 108901 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 341595 77627457 ~ 77642149 (-) True LOC110524609
XM_021604434.2 mRNA downstream 343950 77627457 ~ 77639794 (-) False LOC110524609
XM_021604432.2 mRNA downstream 366033 77558322 ~ 77617711 (-) True LOC110524608
XM_021604453.2 mRNA upstream 252113 78239768 ~ 78245830 (-) True LOC110524621
XM_021604464.2 mRNA upstream 395350 78383005 ~ 78387067 (-) True hyi
XM_021604478.2 mRNA upstream 1231498 79219153 ~ 79226639 (-) False LOC110524635
LOC118964722 mRNA upstream 1255592 79243247 ~ 79282591 (-) True LOC118964722
XR_005051973.1 mRNA upstream 1306604 79294259 ~ 79294385 (-) True LOC118964780
TU500657 other downstream 356530 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 576609 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 962369 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 1080973 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1393374 76586458 ~ 76590370 (-) True G441168
TU501172 other upstream 94090 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 976976 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1235485 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1236348 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1743332 79730987 ~ 79731536 (-) True G444691

Expression Profile