RNA id: XM_021604464.2



Basic Information


Item Value
RNA id XM_021604464.2
length 1235
RNA type mRNA
GC content 0.48
exon number 8
gene id hyi
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78383005 ~ 78387067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGTCAAACTATTTGTTTCGTTGTGCGCATGTGCAACATATGAGTCGCAGTACAGAGAATAATGAActctactagctagctagcactcctgTCTGGCAGCTCGGTTATATCAATATTTGACATCACATGAGAAACAAACAACATCAGGTGACAGCTGAGACAATGGACCTTGAGTTTTAATCCTGctattctagctagctacttagaGCGGTTGTCCCATTGAACATTAGCAAGCGGACTAACGTTAGCTTGCCAGCCCACCCCACAAGAAACATGCCCCCATTAAAATTCTGCGCGAATCTTTCGTGGTTGTTTACGGATCTGCCAGAGTTTACCCAGAGAATCTATGCTGCTGCATCGGCTGGGTTTCAGGCTGTGGAGGCGGCATGGCTGTATGACTCTGACTTACAGGAGCTCCAGAGAGTCAAGAATGCTACTGGGGTTGATGTGGTGCTGATTAACACCCCCCTTGGAGATGCTAAGGCAGGTGATCTTGGTCTGGGTGCTGTTCCTGGCAGAGAGGAGGACTTCAGAAAGGGTCTGGATCTGGCCATGCAGTACGCCAAGGCTCTGGACTGCAGGAGGATCCACTTGATGGCTGGGAGGGTACCTGTGGGGGCAGACCGAGCTACCATTGCCGTGGAAATGGAGGACACCTTTGTACAAAACCTAAAACATGCTGCCGATGTCCTCTCAAATGAGGGCATCACTGGCCTGATTGAGCCCATCAACACACGGATAACAGATCCCAGATATTTCCTGGACAGTCCACATCAGGCGGCTGCAATCCTGCAGAAGGTTGGCCACCCAAATATTAAACTACAGATGGATGTCTTCCACTGGCAGATAATGGACAACAACTTGACACAGAACATACACAAATATTTCCCTCTCATCGGTCACATCCAGATAGCCCAGGTGCCCGGCAGGAACGAGCCAGACAGTGCAGGAGAACTTAACTTCCCATATCTCTTCAGTCTACTGGAGGAGATGGGTTACCAGGGATACATCGGCTGTGAATACAAACCACTAGGCTCTACAAATGAAGGTCTTGGTTGGGTGAAAGATTACTTGAAGCGCAACAGGTGATGGCTGAGAGGACCACACATGCAAACGTTTGCCAGTACCAGCCTTTCCATAGAGGCAACAGTCATCGCTGATGAGTCTTATTTCAACTCCGATAAACAGTTCATTATTGTGAAATGGGCTTATTAAACAGCAGGCTAAACACTTGA

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008903 hydroxypyruvate isomerase activity molecular_function

KEGG:

id description
K01816 hyi, gip; hydroxypyruvate isomerase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU501637 lncRNA downstream 14222 78367502 ~ 78368783 (-) False G443189
TU501638 lncRNA downstream 14665 78367502 ~ 78368340 (-) True G443189
TU501615 lncRNA downstream 41132 78340415 ~ 78341873 (-) False G443169
TU501616 lncRNA downstream 41132 78340415 ~ 78341873 (-) True G443169
TU501609 lncRNA downstream 45029 78337758 ~ 78337976 (-) True G443167
TU501673 lncRNA upstream 39578 78426645 ~ 78429140 (-) True G443224
TU501754 lncRNA upstream 98924 78485991 ~ 78486198 (-) True G443304
TU501814 lncRNA upstream 120130 78507197 ~ 78511955 (-) True G443357
TU501815 lncRNA upstream 120523 78507590 ~ 78519646 (-) True G443358
TU501821 lncRNA upstream 121684 78508751 ~ 78528411 (-) False G443360
XM_021604453.2 mRNA downstream 137175 78239768 ~ 78245830 (-) True LOC110524621
XM_021604447.2 mRNA downstream 395350 77983744 ~ 77987655 (-) True glulb
XM_021604446.2 mRNA downstream 444004 77925215 ~ 77939001 (-) False znf648
XM_021604443.2 mRNA downstream 508162 77871765 ~ 77874843 (-) True gadd45ab
XM_036978450.1 mRNA downstream 740856 77627457 ~ 77642149 (-) True LOC110524609
XM_021604478.2 mRNA upstream 832086 79219153 ~ 79226639 (-) False LOC110524635
LOC118964722 mRNA upstream 856180 79243247 ~ 79282591 (-) True LOC118964722
XR_005051973.1 mRNA upstream 907192 79294259 ~ 79294385 (-) True LOC118964780
XM_036978488.1 mRNA upstream 998473 79385540 ~ 79459507 (-) False cdh2
XM_036978489.1 mRNA upstream 999822 79386889 ~ 79450198 (-) False cdh2
TU501172 other downstream 300995 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 755791 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 975870 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 1361630 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 1480234 76902382 ~ 76902771 (-) True G441483
TU502514 other upstream 577564 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 836073 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 836936 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 1343920 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 1595394 79982461 ~ 79987704 (-) False G445115

Expression Profile