RNA id: XM_036978489.1


Basic Information

Item Value
RNA id XM_036978489.1
length 2601
RNA type mRNA
GC content 0.55
exon number 15
gene id cdh2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79385540 ~ 79459507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCAGGCCGTGCCATGCAGACCTCTACAAtgAGTTTTGCCGATTGCGGCCTGGGCGACAGGGTTCTGTTGGAGGTGGGCGACGCGGTGCACTTCAGGCTTGGTGAAGATGGCATGGTGTACACCCGGCACTCCCTCCGTCTTGCGGACAGGAAGAGAGCCTTCCTGGTGGTGCGAGCGAGGGATCAGAAAACCAAGGAGGAGTGGAACACACGCGTTCACCTCCACCTCCGGACAGATGGACAGGGGGAGACGACAGAACACAACAAACAGGTGAACTCCAGTGATGCAGCTGTGATCATGTTTCCATGGCGTAGCGTTGTCGTCAGGGGTGATGGATCTCTGAGGCGGGTAAAGAGGGACTGGGTCATCCCCCCCATCAACGTCCCTGAGAACTCACGAGGACAGTTCCCAGAGGAACTAGTCAGGATCCGGTCGGACCGTGATAAGAACCGTCTCCTCCGGTACAGTGTGACTGGACCCGGTGCTGATCAGCCTCCAACCGGGATCTTCATCATCAACCCCAtctctggtcagctctctgtgacCAAACCCCTCGACCGCGAACACATCTCCAACTTCCATCTGCGAGCCCATGCTGTGGACCTGAATGGGAACCAGATAGAGAACCCCATAGACATTGTCATCAATGTCATAGACATGAACGACAACAGACCAGAGTTCACACACACCATCTACAACGGATCAGTACCAGAGGGCTCCAAACCAGGGTCCTTTGTGATGACAGTGACATCAGTGGACAAGGATGACCCTAAAACAGCCAATGGGATGCTCCGATACAAGATTATATCTCAGAACCCTGAGAGTCCTTCTTCCAACATGTTCACCATCAACAACAAGACAGGAGGCATCATCACTGTAGCAGCAGGCCTCGACAGAGAGAAAGTTCCTCAGTACACACTGATAATCCAGGCTACTGACATGGAGGGGAACCCCACCTACGGTCTGTCTAACACAGCTACAGCTATCATCAGGATCACTGACGTCAATGATAACCCCCCAGAGTTCACCGCTGACACATTTTATGGAGATGTGCATGAGAACCGTGTGAATGTGATCGTAGCTAACCTGACAGTGACAGACAAGGACCAGCCCCATACTGCAGCCTGGAGGACTGTGTACAGGATCACCGCTGGAGACCCCACTGGACGCTTCTCCATCCCCACTGACCCCACCACCAACGAGGGACTGGTCACTGTGGTCAAGCCCATAGACTATGAGGTCAGTCGTTCCTTTGTGTTGACGGTGCTGGCTGAGAATGAGGTTGCCCTGGCCCGTGGTATCCACCTGCCCCGTCAGTCCACCGCTACTGTGTCTGTACGCATTGCAGATGTCAACGAGAGCCCAGAGTTCTCCCCCAACCCTAAAGCCATCAAACTGGAGGAGGGACTACCAGCCGGCTCGCTACTCACCACCTTCACAGCACAGGACCCTGACAGATACATGCTTCAGAACATACGGTATTCAAAGCTGTTTGACCCTGCTAATTGGTTGGAGATAGACCCTGTAAATGGGCGGATCTCCACCATCGCTGTGCTGGACAGAGAGTCTCCCTATGTGAAGAATAACCTCTACAACATCACCTTCATGGCCTCTGACAAtggcATCCCCCCTGCCAGTGGTACGGGTACGTTACAGATGTACCTTTTAGACATAAACGACAATGCTCCTCATGTCTTCCCTCCGGAAGTGGAGATGTGTGAGAAGCCTGAGCCCAACGCCATCAACATCACCGCCAGCGACCCAGATCTGACCCCTAACGCCGGCCCCTTTGCCTTCGAACTGGCCAACCGGCCGGCAGACGCACGACGAAACTGGACCCTCACACGCCTCAatgGTGAATATGCTCAGATCAGGCTGCGGATAGGTTTTCTGGAGAGTGGTATCTACGAGGTTCCAATCATCATCACAGACTCAGGCAACCTGCCCATGTCCAATACATCCTACCTGAGGGTCAAGGTGTGTCAGTGTGATCACCATGGAGATTGTGTGGACATGGAACGCATCATCGCAGCAGGCCTGGGCACTGGAGCCATCATCGCCATCCTCATCTGTATCATCATAATGCTAGtgatggtgttgTTCTTTGTGATGTGGATGAAGAGGAGGGATAAGGAACGTCAGGCTAAGCAGCTGCTGATCGACCCGGAGGACGATGTCAGAGACAACATACTGAAGTACGacgaagagggaggaggagaggaggaccagGACTATGACCTGAGCCAGCTGCAGCAGCCCGACGCGTTGGAGCCAGAGATGGTAAAGGTGGGAATCAGGCGTATGGACGAGAGACCCCTCCACCAGGACCACCTGTACCCCCTCCGCTCTGCTGCACCACACCCAGGAGATATAGGAGACTTCATCCATGAGggTCTGAAGGCAGCTGATAACGACCCGACGGCGCCCCCCTACGACAGCCTGCTGGTTTTTGACTATGAGGGCAGCGGCTCCACCGCCGGCTCCCTCAGCTCCCTTCACTCGTCTTCCTCCGGCGGAGACCAGGACTACGACTACCTCAGTGACTGGGGCCCGCGCTTCCGCAAGCTGGCAGACCTCTACGGAGGAGGGGACGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502850 lncRNA downstream 101 79385542 ~ 79386788 (-) True cdh2
TU502856 lncRNA downstream 5432 79381242 ~ 79381457 (-) True G444318
TU502770 lncRNA downstream 32486 79354168 ~ 79354403 (-) True G444238
TU502767 lncRNA downstream 33824 79352850 ~ 79353065 (-) True G444235
TU502698 lncRNA downstream 126659 79259305 ~ 79260230 (-) True G444170
TU502988 lncRNA upstream 74339 79524537 ~ 79525518 (-) True G444443
TU502995 lncRNA upstream 82308 79532506 ~ 79532738 (-) True G444449
TU503119 lncRNA upstream 178236 79628434 ~ 79628680 (-) True G444572
TU503120 lncRNA upstream 179712 79629910 ~ 79630114 (-) True G444573
TU503124 lncRNA upstream 182240 79632438 ~ 79632646 (-) True G444577
XR_005051973.1 mRNA downstream 92504 79294259 ~ 79294385 (-) True LOC118964780
LOC118964722 mRNA downstream 104298 79243247 ~ 79282591 (-) True LOC118964722
XM_021604478.2 mRNA downstream 160250 79219153 ~ 79226639 (-) False LOC110524635
XM_021604464.2 mRNA downstream 999822 78383005 ~ 78387067 (-) True hyi
XM_021604453.2 mRNA downstream 1141059 78239768 ~ 78245830 (-) True LOC110524621
XR_005051592.1 mRNA upstream 86386 79536584 ~ 79606825 (-) True LOC118964535
XM_021604482.2 mRNA upstream 414979 79865177 ~ 79896739 (-) False LOC110524638
XM_036978490.1 mRNA upstream 414979 79865177 ~ 79896739 (-) True LOC110524638
XM_036978494.1 mRNA upstream 537928 79988126 ~ 80015753 (-) False b4galt6
XM_036978493.1 mRNA upstream 537928 79988126 ~ 80016228 (-) False b4galt6
TU502678 other downstream 149428 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 161021 79224003 ~ 79225868 (-) True LOC110524635
TU502514 other downstream 420860 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1304879 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 1759675 77623299 ~ 77627214 (-) False G442381
TU503246 other upstream 280789 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 532263 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 726564 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 775277 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 795745 80245943 ~ 80261505 (-) True G445220

Expression Profile