RNA id: XM_036978496.1


Basic Information

Item Value
RNA id XM_036978496.1
length 4835
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC118964650
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80192385 ~ 80197919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGACGAAACTGACTCACCCAAGAGGGGTGGCAGTGCAAGATCCTTTGCTGCCTTTGATCAGGAAAGActggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGttcccagacctcagtgaaagtcctcctgggaatgacagaggacagaatcatcaaaagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATCAAGGTGGTGGTCGAACAGCTTAACTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGGTCATCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACACCACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGAGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATGGAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCAACCATTACTGTCTCTCTGGGATTCCAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTCCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagagccttttcccacccacagagtcttctactactctatggcaggcagactctatgcttcaacagagtgatgagaaaacctcagagtacactgaggccacacccaaaggctcacagtctggtttggaagtatctgagaagaagatctggacaactgcaaatactatttaccacaatgtgaagacaaagatgaggaattattttacatggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggtttcaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTAACAGCTGCGATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcttccgatacagtccttactgagctgaagaggaatgacaagaCGGTGGGGAAGCCCACAGCTTACAAGCTGGTTCAGCTTTTTGCAGAGGAGTCTGTGAAGCGCCTCTTGCTTCCTAGCCTTATGCCCTCTACAGcttcaatgagtttggctcagggagttagtgtgccggctagcgtatctgaagataggatttcatgttctttttctacatcagcatttagtgacacagtcagcctgtttaccaaagtaatggtaagccaggtcatggactctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGCCTTTGTCTTCATTTGTGTTGCCCTGTTAACACATTTGATTAGAAAATACATAgtatatttagtttagtttattatgcAGTCAGAGTCACGGTGTAGGCTAAACAAAGTAATGTTGTCCTGAATAATGTATAGAACATgcacccccacccacacacacacaaacagtgtgattcattgaacacacacacatagtacttCAGTTATGTCCCACAACCAACATTCGACCAGATATCAATGATtcagtgtaaaatacatgtactgtaaaataaaccgtatttaatttacaaccaataaaataatacatgatgcaggacactcagttataagggaattaactggtttaacttctcaaacagaaacacacacatttccattttctgtggatcgcccatgtttacattttactgaatgccagtctgacctttgacctgtagATGACAATAAAGGTCTACTTTTGCTGCAGATCCACTTCTAAAGCTCAAACCTCTCTGGACAAGTAGCCAAAACATTTGTCCCTagtgagagagagtatgtgtgtgtggcaaaaaagggaatattgcactacacttttatgatacagatacattttgcattcggtagcatagcacagctgtagttttttcaaatgccaaatgtacatgtagcatgcttctgcctACAGATGCTTTTCTGAGTGACTTGTGTTGTGAGAGAACCAGAATTCAAACATAAACTCCTGGATTACATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503788 lncRNA downstream 19764 80172237 ~ 80172621 (-) True G445191
TU503783 lncRNA downstream 20352 80171543 ~ 80172033 (-) True G445189
TU503768 lncRNA downstream 39653 80152398 ~ 80152732 (-) True G445174
TU503767 lncRNA downstream 42219 80149920 ~ 80150166 (-) True G445173
TU503745 lncRNA downstream 118671 80073434 ~ 80073714 (-) True G445152
TU503799 lncRNA upstream 3031 80200950 ~ 80201243 (-) True G445202
TU503803 lncRNA upstream 22719 80220638 ~ 80220893 (-) True G445206
TU503814 lncRNA upstream 44667 80242586 ~ 80242951 (-) True G445217
TU503822 lncRNA upstream 107168 80305087 ~ 80305701 (-) True LOC118964724
TU503823 lncRNA upstream 113681 80311600 ~ 80311884 (-) True G445225
XM_021604489.2 mRNA downstream 25642 80075696 ~ 80166743 (-) True LOC110524643
XM_021604488.2 mRNA downstream 25650 80075696 ~ 80166735 (-) False LOC110524643
XM_036978492.1 mRNA downstream 176142 79988126 ~ 80016243 (-) True b4galt6
XM_036978493.1 mRNA downstream 176157 79988126 ~ 80016228 (-) False b4galt6
XM_036978494.1 mRNA downstream 176632 79988126 ~ 80015753 (-) False b4galt6
XM_036978498.1 mRNA upstream 10493 80208412 ~ 80210788 (-) True LOC118964651
XM_036978499.1 mRNA upstream 13265 80211184 ~ 80213484 (-) True LOC118964652
XM_036978500.1 mRNA upstream 25321 80223240 ~ 80233361 (-) False LOC118964653
XM_036978501.1 mRNA upstream 25377 80223296 ~ 80233361 (-) False LOC118964653
XM_036978510.1 mRNA upstream 43080 80240999 ~ 80244648 (-) True LOC118964655
TU503794 other downstream 15305 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 204681 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 460849 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 954924 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other downstream 966517 79224003 ~ 79225868 (-) True LOC110524635
TU503806 other upstream 27556 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 48024 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 1745366 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2192736 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 3119594 83317513 ~ 83319715 (-) False G447993

Expression Profile