RNA id: XM_036978510.1


Basic Information

Item Value
RNA id XM_036978510.1
length 2275
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC118964655
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80240999 ~ 80244648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACGGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactaTTCCTGAGTTtcgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGGCAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagATGTTAAGTAATTAATGTTGATATTATCCAAAGGGTTTTTAACTGAAATGTTAAATGTTACATTTACGCTCATATTTGTAAATGGTATTTCAAAAATGGCGGAATCAAAAAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCCATTTTAATGAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATGCAAAAAAaactttctcaagcaataattttgctaggactgtctgggagtggtcagtgtggaggggaaattaaaactagctgttattggcactcTCATTGTCGTTGGTCTATAAACCAATTTACACATGGTGATGTCGCCATGGAAAGCCAAAATTCtggcccatgcaaacctgctgattagaaggtgctGTATAGATGTGAGAAACTCTCTTTTCATGGCACTTCAATATCGAAGTgaatttttcgtagcaggttaggaaactgaggttaaggttaggaaaagggttagtgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503803 lncRNA downstream 20106 80220638 ~ 80220893 (-) True G445206
TU503799 lncRNA downstream 39756 80200950 ~ 80201243 (-) True G445202
TU503788 lncRNA downstream 68378 80172237 ~ 80172621 (-) True G445191
TU503783 lncRNA downstream 68966 80171543 ~ 80172033 (-) True G445189
TU503768 lncRNA downstream 88267 80152398 ~ 80152732 (-) True G445174
TU503822 lncRNA upstream 60439 80305087 ~ 80305701 (-) True LOC118964724
TU503823 lncRNA upstream 66952 80311600 ~ 80311884 (-) True G445225
TU503824 lncRNA upstream 67647 80312295 ~ 80312631 (-) True G445226
TU503828 lncRNA upstream 91102 80335750 ~ 80335953 (-) True G445230
TU503843 lncRNA upstream 142983 80387631 ~ 80388000 (-) True G445244
XM_036978500.1 mRNA downstream 7638 80223240 ~ 80233361 (-) False LOC118964653
XM_036978501.1 mRNA downstream 7638 80223296 ~ 80233361 (-) False LOC118964653
XM_036978499.1 mRNA downstream 27515 80211184 ~ 80213484 (-) True LOC118964652
XM_036978498.1 mRNA downstream 30211 80208412 ~ 80210788 (-) True LOC118964651
XM_036978496.1 mRNA downstream 43080 80192385 ~ 80197919 (-) True LOC118964650
XM_036979063.1 mRNA upstream 3045 80247693 ~ 80264560 (-) True LOC118964723
XM_036978507.1 mRNA upstream 11464 80256112 ~ 80259829 (-) False LOC118964654
XM_036978508.1 mRNA upstream 11464 80256112 ~ 80259829 (-) True LOC118964654
XM_036978509.1 mRNA upstream 23959 80268607 ~ 80270301 (-) True LOC110514042
XM_036979064.1 mRNA upstream 37870 80282518 ~ 80308754 (-) False LOC118964724
TU503806 other downstream 14798 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 63919 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 253295 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 509463 79730987 ~ 79731536 (-) True G444691
TU502678 other downstream 1003538 79223140 ~ 79237461 (-) False LOC110524635
TU503818 other upstream 1295 80245943 ~ 80261505 (-) True G445220
TU505560 other upstream 1698637 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2146007 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 3072865 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 3073988 83318636 ~ 83319715 (-) True G447993

Expression Profile