RNA id: XM_036978508.1


Basic Information

Item Value
RNA id XM_036978508.1
length 2346
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC118964654
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80256112 ~ 80259829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGATGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATAATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagtttcgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGGCAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagATGTTAAGTAATTAATGTTGATATTATCCAAAGGGTTTTTAACTGAAATGTTAAATGTTACATTTACGCTCATATTTGTAAATGGTATTTCAAAAATGGCGGAATCAAAAAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCCATTTTAATGAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATGCAAAAAAaactttctcaagcaataattttgctaggactgtctgggagtggtcagtgtggaggggaaattaaaactagctgttattggcactcTCATTGTCGTTGGTCTATAAACCAATTTACACATGGTGATGTCGCCATGGAAAGCCAAAATTCtggcccatgcaaacctgctgattagaaggtgctGTATAGATGTGAGAAACTCTCTTTTCATGGCACTTCAATATCGAAGTgaatttttcgtagcaggttaggaaactgaggttaaggttaggaaaagggttagtgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503814 lncRNA downstream 13161 80242586 ~ 80242951 (-) True G445217
TU503803 lncRNA downstream 35219 80220638 ~ 80220893 (-) True G445206
TU503799 lncRNA downstream 54869 80200950 ~ 80201243 (-) True G445202
TU503788 lncRNA downstream 83491 80172237 ~ 80172621 (-) True G445191
TU503783 lncRNA downstream 84079 80171543 ~ 80172033 (-) True G445189
TU503822 lncRNA upstream 45258 80305087 ~ 80305701 (-) True LOC118964724
TU503823 lncRNA upstream 51771 80311600 ~ 80311884 (-) True G445225
TU503824 lncRNA upstream 52466 80312295 ~ 80312631 (-) True G445226
TU503828 lncRNA upstream 75921 80335750 ~ 80335953 (-) True G445230
TU503843 lncRNA upstream 127802 80387631 ~ 80388000 (-) True G445244
XM_036978510.1 mRNA downstream 11464 80240999 ~ 80244648 (-) True LOC118964655
XM_036978500.1 mRNA downstream 22751 80223240 ~ 80233361 (-) False LOC118964653
XM_036978501.1 mRNA downstream 22751 80223296 ~ 80233361 (-) False LOC118964653
XM_036978499.1 mRNA downstream 42628 80211184 ~ 80213484 (-) True LOC118964652
XM_036978498.1 mRNA downstream 45324 80208412 ~ 80210788 (-) True LOC118964651
XM_036978509.1 mRNA upstream 8778 80268607 ~ 80270301 (-) True LOC110514042
XM_036979064.1 mRNA upstream 22689 80282518 ~ 80308754 (-) False LOC118964724
XM_036978503.1 mRNA upstream 28258 80288087 ~ 80302018 (-) False LOC118936654
XR_005051870.1 mRNA upstream 28744 80288573 ~ 80290178 (-) True LOC118964656
XM_036978502.1 mRNA upstream 38611 80298440 ~ 80302018 (-) False LOC118936654
TU503806 other downstream 29911 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 79032 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 268408 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 524576 79730987 ~ 79731536 (-) True G444691
TU502679 other downstream 1030244 79224003 ~ 79225868 (-) True LOC110524635
TU505560 other upstream 1683456 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2130826 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 3057684 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 3058807 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3250524 83510353 ~ 83520273 (-) True G448079

Expression Profile