RNA id: XM_036979065.1



Basic Information


Item Value
RNA id XM_036979065.1
length 1247
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118964725
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80313824 ~ 80380303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACCCACAAGAGAGACAATATTGCAAAGGCAGGACCATGTTCGATGGAAGGCGTAGGGGTAGGCAATCGAAAACGTTTGACGGGGAAATTTCTGTCAATATTAGCGAGTCCTACTGAGTGGGCAAGTAACCTTTCCCGCGCTCTTCCTAAAAATActatttgtgatgtcataaaggtcTAACGTTCCATGACGTCGCATGTAGCCCTAAATTACAGTCCCTGCTTGCAATATTGTCCTCACTCTCGACCTGAACTCAACTTGAATGTAACCAACACAGACAAGGACATGCTTTTTGAGATATAAAATAGCTTGAATGGATGAAGAAATGGTAAGCTAAATTACTTCATGCAATATTGGGGGAAAGTAAAAAAAGGGTAAAGCAATATAAGCAGATATTTCTTGTAAAAAGCTATAACATATTGTAAAGCAAATGTACCATTCTTTATAAAGTCACCAGCTTAGCGctgatatggctgtagctctatttatgatgtcctctgcacagatctactctgacattgacatattattacttattggaatgtctgtccttcaggtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCGGTGGCCACGCCCAAAGAGGAGGCCAAGAAGGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGACACTGACAATGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGATCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTCAGGCTGCATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctATGACGAAGGAACAGCTTGCCAAATTGTGCAAGACAATTGTAACCTTCATCGCACAGACCACCCTGAAGATCCTGCTGCCAGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGGTATGTTCCCCTCAAGGTTTTCATGTATGGATTTCAGCAAGATCATCTATCCCAGTGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503824 lncRNA downstream 1193 80312295 ~ 80312631 (-) True G445226
TU503823 lncRNA downstream 1940 80311600 ~ 80311884 (-) True G445225
TU503822 lncRNA downstream 8123 80305087 ~ 80305701 (-) True LOC118964724
TU503814 lncRNA downstream 70873 80242586 ~ 80242951 (-) True G445217
TU503803 lncRNA downstream 92931 80220638 ~ 80220893 (-) True G445206
TU503843 lncRNA upstream 7328 80387631 ~ 80388000 (-) True G445244
TU503844 lncRNA upstream 8344 80388647 ~ 80388868 (-) True G445245
TU503846 lncRNA upstream 13169 80393472 ~ 80393693 (-) True G445247
TU503847 lncRNA upstream 14623 80394926 ~ 80395331 (-) True G445248
TU503865 lncRNA upstream 45723 80426026 ~ 80426401 (-) True G445265
XM_036979064.1 mRNA downstream 5070 80282518 ~ 80308754 (-) False LOC118964724
XM_036978505.1 mRNA downstream 11804 80298440 ~ 80302020 (-) False LOC118936654
XM_036978503.1 mRNA downstream 11806 80288087 ~ 80302018 (-) False LOC118936654
XM_036978502.1 mRNA downstream 11806 80298440 ~ 80302018 (-) False LOC118936654
XM_036978504.1 mRNA downstream 11807 80298462 ~ 80302017 (-) True LOC118936654
XM_036978512.1 mRNA upstream 20728 80401031 ~ 80403359 (-) True LOC118964658
XM_036979066.1 mRNA upstream 24500 80404803 ~ 80412432 (-) True LOC118964726
XM_036979067.1 mRNA upstream 34640 80414943 ~ 80418042 (-) True LOC118964727
XM_036978525.1 mRNA upstream 40784 80421087 ~ 80438415 (-) False LOC118964666
XM_036978521.1 mRNA upstream 50849 80431152 ~ 80434587 (-) True LOC118964663
TU503818 other downstream 52319 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 87623 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 136744 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 326120 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 582288 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1562982 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2010352 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2937210 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2938333 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3130050 83510353 ~ 83520273 (-) True G448079

Expression Profile