RNA id: XM_036979067.1



Basic Information


Item Value
RNA id XM_036979067.1
length 1122
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC118964727
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80414943 ~ 80418042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGACGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATATGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503847 lncRNA downstream 19612 80394926 ~ 80395331 (-) True G445248
TU503846 lncRNA downstream 21250 80393472 ~ 80393693 (-) True G445247
TU503844 lncRNA downstream 26075 80388647 ~ 80388868 (-) True G445245
TU503843 lncRNA downstream 26943 80387631 ~ 80388000 (-) True G445244
TU503828 lncRNA downstream 78990 80335750 ~ 80335953 (-) True G445230
TU503865 lncRNA upstream 7984 80426026 ~ 80426401 (-) True G445265
TU503867 lncRNA upstream 12102 80430144 ~ 80430372 (-) True G445267
TU503868 lncRNA upstream 19191 80437233 ~ 80437816 (-) True LOC118964666
TU504146 lncRNA upstream 239551 80657593 ~ 80661257 (-) True G445518
TU504187 lncRNA upstream 307729 80725771 ~ 80791140 (-) True G445557
XM_036979066.1 mRNA downstream 2511 80404803 ~ 80412432 (-) True LOC118964726
XM_036978512.1 mRNA downstream 11584 80401031 ~ 80403359 (-) True LOC118964658
XM_036979065.1 mRNA downstream 34640 80313824 ~ 80380303 (-) True LOC118964725
XM_036978511.1 mRNA downstream 74363 80339117 ~ 80340580 (-) True LOC118964657
XM_036978513.1 mRNA downstream 88003 80323462 ~ 80326940 (-) True LOC118964659
XM_036978525.1 mRNA upstream 3045 80421087 ~ 80438415 (-) False LOC118964666
XM_036978521.1 mRNA upstream 13110 80431152 ~ 80434587 (-) True LOC118964663
XM_036978515.1 mRNA upstream 37330 80455372 ~ 80462768 (-) False LOC118964660
XM_036978516.1 mRNA upstream 41482 80459524 ~ 80462768 (-) True LOC118964660
XM_036978523.1 mRNA upstream 51464 80469506 ~ 80472720 (-) True LOC118964664
TU503818 other downstream 153438 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 188742 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 237863 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 427239 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 683407 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1525243 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1972613 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2899471 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2900594 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3092311 83510353 ~ 83520273 (-) True G448079

Expression Profile