RNA id: XM_036978515.1


Basic Information

Item Value
RNA id XM_036978515.1
length 5777
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC118964660
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80455372 ~ 80462768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggctatattaaagtgcactaaacatagagacagattaaccatggagaacacgaaacatgatgacagattaaccagggaagtgaatttaacagaggTTAAAGCTAAAACAACAGAATCTGGGTACgtctgtgtgaagaggtgtggctttagtgtggatttgaatagtacacaagtaggcctacgctatttttgcactgtaaaacttttttttaagtgttatgtTTTCCCAGATTCATAGTGTTATGCAGCCCAGGCCTATCTAGGAAGGCTGGCCATAAATTGTTTGCTCACAGCATCACATGATGACGTGggcaacataaacacttaaactctgtagattaaagttaatagtaatcaaaactaatttcaccacGAAAGGAAGTGCAATCGAAATGAATGAAGAAGACAATGTAATTCTAGTGAGTTAATAAAATGACAAGGTGTTGCCTGTCAGCGTTGTAGACTACTGCCTCACAAGCCCGGGCTTTAGTGGCACTGGCATACGCGCTTGCATCTGCACTGAAGGAGCCACCGAACGCGTCCGCGTTGCAGCTCTCACTTTCTCccgctacagtatgtcctacaatGACATATTTGGTGGGGATTGGCAGCCAACAATAGGATTGGATTGGGACTAAATCAAAGAATAAAACGACATTGAAATGAATATTATTAACAAATATTTCCCAGCAGATTTTGGGTTCAACCTAAGGCTGACTAGGACAGATCAATCAACTTGATCCGACACAGTAAGCCTACATGTCATACGTAAGTAAATCCACAAGAGAGACAATATTGCAAAGGCAGGACCATGTTCGATGGAAGGCGTAGGGGTAGGCAATCGAAAACGTTTGACGGGGAAATTTCTGTCAATATTAGCTAGTCCTACTGAGTGGGCAAGTAACCTTTCCCGCGCTCTTCCTAAAAATActatttgtgatgtcataaaggtcTAACGTTCCATGACGTAGCATGTAGCCCTAAATTACAGTCCCTGCTTGCAATATTGTCCTCACTCTCGACCTGAACTCAACTTGAATGTAACCAACACAGACAAGGAAATGCTTTTTGAGATATAAAATAGCTTGAATGGATGAAGAAAGGGTATGCTAAATTACTTCATGCAATATTGGGGGAAAATAAAAAAGGGTAAAGCAATATAAGCGGATATTTCTTGTAAAAAGCTATAACATATTGTAAAGCAAATGTACCATTCTTTATAAAGTCACCAGCTTAGCGctgatatggctgtagctctatttatgatgtcctctgcacagatctactctgacattgacatattattacttattggaatgtctgtccttcaggtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCGGTGGCCACGCCCAAAGAGGAGGCCAAGAAAGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGGCACTGACAACGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGATCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTAAGGCTGCATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGTTCCCAGACTTCAGTGAAAGTCCTCCTGGGAATGACAGAGGACAGAATCATCAAAagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATCAAGGTGGTGGTCGAACAGCTTAACTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGATCCTCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACACCACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGTGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATGGAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAAAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTCAATGCCAAAGTGAGAACTCTCAaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTCCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagaGCCTTTTCCCACCCACAGAGTCTTCTACTACTCTATGGCAGGCAGACTCTATGCTTCAACAGAGTGATGAGAAAACCTCAGAGTACACTGAGGCCACACCCAAAGGCTCACAGTCTGGTTTGGAAGTATCTGAGAAGAAGATCTGGACAACTGCAAATACTATTTACCACAATGTGAAGACAAAGATGAGGAATTATTTTGCATGGCAAAATCAAGtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggttttaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgcattccaccctgatctaacagctgcaatagcaagactggaggagctcatatctcagggtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggagttagtgtgccggctagcgtatctgaagataggatttcatgttctttttctacatcagcatttagtgacacagtcagcctgtttaccaaagtaatggtaagccaggtcatggactctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacggttttcaaagcaagcttaatacaacaatttcctttaatacagtaatatttgcattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503868 lncRNA downstream 17556 80437233 ~ 80437816 (-) True LOC118964666
TU503867 lncRNA downstream 25000 80430144 ~ 80430372 (-) True G445267
TU503865 lncRNA downstream 28971 80426026 ~ 80426401 (-) True G445265
TU503847 lncRNA downstream 60041 80394926 ~ 80395331 (-) True G445248
TU503846 lncRNA downstream 61679 80393472 ~ 80393693 (-) True G445247
TU504146 lncRNA upstream 194825 80657593 ~ 80661257 (-) True G445518
TU504187 lncRNA upstream 263003 80725771 ~ 80791140 (-) True G445557
TU504228 lncRNA upstream 341545 80804313 ~ 80806686 (-) True G445596
TU504242 lncRNA upstream 364401 80827169 ~ 80827490 (-) True G445610
TU504245 lncRNA upstream 371633 80834401 ~ 80834710 (-) True G445613
XM_036978525.1 mRNA downstream 16957 80421087 ~ 80438415 (-) False LOC118964666
XM_036978521.1 mRNA downstream 20785 80431152 ~ 80434587 (-) True LOC118964663
XM_036979067.1 mRNA downstream 37330 80414943 ~ 80418042 (-) True LOC118964727
XM_036979066.1 mRNA downstream 42940 80404803 ~ 80412432 (-) True LOC118964726
XM_036978512.1 mRNA downstream 52013 80401031 ~ 80403359 (-) True LOC118964658
XM_036978523.1 mRNA upstream 6738 80469506 ~ 80472720 (-) True LOC118964664
XR_005051871.1 mRNA upstream 11272 80474040 ~ 80477042 (-) True LOC118964668
XM_036978524.1 mRNA upstream 21089 80483857 ~ 80485280 (-) True LOC118964665
XM_036978526.1 mRNA upstream 25516 80488284 ~ 80490780 (-) True LOC118964667
XM_036978520.1 mRNA upstream 36940 80499708 ~ 80502221 (-) True LOC118964662
TU503818 other downstream 193867 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 229171 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 278292 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 467668 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 723836 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1480517 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1927887 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2854745 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2855868 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3047585 83510353 ~ 83520273 (-) True G448079

Expression Profile