RNA id: XM_036978520.1


Basic Information

Item Value
RNA id XM_036978520.1
length 2062
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118964662
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80499708 ~ 80502221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaattattttacatggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggtttcaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGAAGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgcattccaccctgatctaacagctgcaatagcaagactggaggagctcatatctcagggtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggCGGCTGAAAAGAGTGCATCCGATACAGTCCTTACTgagctgaagaggaatgacaagaCGGTGGGGAAGCCCACAGCTTACAAGCTGGTTCAGCTTTTTGCAGAGGAGTCTGTGAAACGCCTCTTGCTTCCTAGCCTTGTGCCCTCTACAGcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGGTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGTCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacggttttcaaagcaagcttaatacaacaatttcctttaatacagtaatatttgcattgaattgatggcctttgtcttctttagtgttgccctgttaacacatttgattagaaaatacatagtatatttagtttagtttattatgcAGTCATAGTCACGGTGTAGGCTAAACAAAGTAATGTTGTCCTGAATAATGTCTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503868 lncRNA downstream 61892 80437233 ~ 80437816 (-) True LOC118964666
TU503867 lncRNA downstream 69336 80430144 ~ 80430372 (-) True G445267
TU503865 lncRNA downstream 73307 80426026 ~ 80426401 (-) True G445265
TU503847 lncRNA downstream 104377 80394926 ~ 80395331 (-) True G445248
TU503846 lncRNA downstream 106015 80393472 ~ 80393693 (-) True G445247
TU504146 lncRNA upstream 155372 80657593 ~ 80661257 (-) True G445518
TU504187 lncRNA upstream 223550 80725771 ~ 80791140 (-) True G445557
TU504228 lncRNA upstream 302092 80804313 ~ 80806686 (-) True G445596
TU504242 lncRNA upstream 324948 80827169 ~ 80827490 (-) True G445610
TU504245 lncRNA upstream 332180 80834401 ~ 80834710 (-) True G445613
XM_036978526.1 mRNA downstream 8928 80488284 ~ 80490780 (-) True LOC118964667
XM_036978524.1 mRNA downstream 14428 80483857 ~ 80485280 (-) True LOC118964665
XR_005051871.1 mRNA downstream 22666 80474040 ~ 80477042 (-) True LOC118964668
XM_036978523.1 mRNA downstream 26988 80469506 ~ 80472720 (-) True LOC118964664
XM_036978515.1 mRNA downstream 36940 80455372 ~ 80462768 (-) False LOC118964660
XM_036979068.1 mRNA upstream 2074 80504295 ~ 80505988 (-) True LOC110524644
XM_036978517.1 mRNA upstream 16184 80518405 ~ 80525390 (-) False LOC118964661
XM_036978518.1 mRNA upstream 16184 80518405 ~ 80525390 (-) False LOC118964661
XM_036978519.1 mRNA upstream 20298 80522519 ~ 80525400 (-) True LOC118964661
XM_036978527.1 mRNA upstream 41709 80543930 ~ 80545673 (-) True LOC118964669
TU503818 other downstream 238203 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 273507 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 322628 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 512004 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 768172 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1441064 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1888434 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2815292 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2816415 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3008132 83510353 ~ 83520273 (-) True G448079

Expression Profile