RNA id: XM_036978518.1


Basic Information

Item Value
RNA id XM_036978518.1
length 5141
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC118964661
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80518405 ~ 80525400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acGAAAGGAAGTGCAATCGAAATGAATGAAGAAGACAATGTAATTCTAATGAGTTAATAAAATTACAAGGTGTTGCCTGTCAGCGTTGTAGACTACTGCCTCACAAGCCCGGGCTTTAGTGGCACTGGCATACGCGCTTGCATCTGCACTGAAGGAGCCACCGAACGCGTCCGCGTTGCAGCTCTCACTTTCTCccgctacagtatgtcctacaatGACATATTTGGTGGGGATTGGCAGCCAACAATAGGATTGGATTGGGACTAAATCAAAGAATAAAACGACATTGAAATGAATATTATTAACAAATATTTCCCAGAAGATTTTGGGTTCAACCTAAGGCTGACTAGGACAGATCAATCAACTTGATCCGACACAGTAAGCCTACGTGTCATACGTAAGTAAACCCACAAGAGAGACAATATTGCAAAGGCAGGACCATGTTCGATGGAAGGCGTAGGGGTAGGCAATCGAAAACGTTTGACGGGGAAATTTCTGTCAATATTAGCTAGTCCTACTGAGTGGGCAAGTAACCTTTCCCGCGCTCTTCCTAAAAATActatttgtgatgtcataaaggtcTAACGTTCCATGACGTCGCATGTAGCCCTAAATTACAGTCCCTGCTTGCAATATTGTCCTCACTCTCGACCTGAACTCAACTTGAATGTAACCAACACAGACAAGGACATGCTTTTTGAGATATAAAATAGCTTGAATGGATGAAGAAAGGgtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCGGTGGCCACGCCCAAAGAGGAGGCCAAGAAAGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGGCACTGACAACGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGATCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTAAGGCTGCATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGTTCCCAGACTTCAGTGAAAGTCCTCCTGGGAATGACAGAGGACAGAATCATCAAAagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATCAAGGTGGTGGTCGAACAGCTTAACTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGATCCTCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACACCACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGTGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATGGAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAAAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTCAATGCCAAAGTGAGAACTCTCAaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTCCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagaGCCTTTTCCCACCCACAGAGTCTTCTACTACTCTATGGCAGGCAGACTCTATGCTTCAACAGAGTGATGAGAAAACCTCAGAGTACACTGAGGCCACACCCAAAGGCTCACAGTCTGGTTTGGAAGTATCTGAGAAGAAGATCTGGACAACTGCAAATACTATTTACCACAATGTGAAGACAAAGATGAGGAATTATTTTGCATGGCAAAATCAAGTCAAAGCAACAACAGCTCAAGCCAAAAAGACCCTCAGCCATATTCTGGTTTTAATTCAGAAAGAGctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCGTTCCACCCTGATCTAACAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAGGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCATCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacggttttcaaagcaagcttaatacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503868 lncRNA downstream 80589 80437233 ~ 80437816 (-) True LOC118964666
TU503867 lncRNA downstream 88033 80430144 ~ 80430372 (-) True G445267
TU503865 lncRNA downstream 92004 80426026 ~ 80426401 (-) True G445265
TU503847 lncRNA downstream 123074 80394926 ~ 80395331 (-) True G445248
TU503846 lncRNA downstream 124712 80393472 ~ 80393693 (-) True G445247
TU504146 lncRNA upstream 132203 80657593 ~ 80661257 (-) True G445518
TU504187 lncRNA upstream 200381 80725771 ~ 80791140 (-) True G445557
TU504228 lncRNA upstream 278923 80804313 ~ 80806686 (-) True G445596
TU504242 lncRNA upstream 301779 80827169 ~ 80827490 (-) True G445610
TU504245 lncRNA upstream 309011 80834401 ~ 80834710 (-) True G445613
XM_036979068.1 mRNA downstream 12417 80504295 ~ 80505988 (-) True LOC110524644
XM_036978520.1 mRNA downstream 16184 80499708 ~ 80502221 (-) True LOC118964662
XM_036978526.1 mRNA downstream 27625 80488284 ~ 80490780 (-) True LOC118964667
XM_036978524.1 mRNA downstream 33125 80483857 ~ 80485280 (-) True LOC118964665
XR_005051871.1 mRNA downstream 41363 80474040 ~ 80477042 (-) True LOC118964668
XM_036978527.1 mRNA upstream 18540 80543930 ~ 80545673 (-) True LOC118964669
XM_021604492.2 mRNA upstream 48037 80573427 ~ 80590120 (-) True mcm3l
XR_005051872.1 mRNA upstream 256404 80781794 ~ 80787795 (-) False LOC118964670
XR_005051873.1 mRNA upstream 256404 80781794 ~ 80787795 (-) True LOC118964670
XM_021604496.2 mRNA upstream 283972 80809362 ~ 80818373 (-) False bmb
TU503818 other downstream 256900 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 292204 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 341325 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 530701 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 786869 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1417895 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1865265 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2792123 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2793246 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2984963 83510353 ~ 83520273 (-) True G448079

Expression Profile