RNA id: XM_036978527.1


Basic Information

Item Value
RNA id XM_036978527.1
length 1290
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118964669
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80543930 ~ 80545673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTAATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacggttttcaaagcaagcttaatacaacaatttcctttaatacagtaatatttgcattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503868 lncRNA downstream 106114 80437233 ~ 80437816 (-) True LOC118964666
TU503867 lncRNA downstream 113558 80430144 ~ 80430372 (-) True G445267
TU503865 lncRNA downstream 117529 80426026 ~ 80426401 (-) True G445265
TU503847 lncRNA downstream 148599 80394926 ~ 80395331 (-) True G445248
TU503846 lncRNA downstream 150237 80393472 ~ 80393693 (-) True G445247
TU504146 lncRNA upstream 111920 80657593 ~ 80661257 (-) True G445518
TU504187 lncRNA upstream 180098 80725771 ~ 80791140 (-) True G445557
TU504228 lncRNA upstream 258640 80804313 ~ 80806686 (-) True G445596
TU504242 lncRNA upstream 281496 80827169 ~ 80827490 (-) True G445610
TU504245 lncRNA upstream 288728 80834401 ~ 80834710 (-) True G445613
XM_036978519.1 mRNA downstream 18530 80522519 ~ 80525400 (-) True LOC118964661
XM_036978517.1 mRNA downstream 18540 80518405 ~ 80525390 (-) False LOC118964661
XM_036978518.1 mRNA downstream 18540 80518405 ~ 80525390 (-) False LOC118964661
XM_036979068.1 mRNA downstream 37942 80504295 ~ 80505988 (-) True LOC110524644
XM_036978520.1 mRNA downstream 41709 80499708 ~ 80502221 (-) True LOC118964662
XM_021604492.2 mRNA upstream 27754 80573427 ~ 80590120 (-) True mcm3l
XR_005051872.1 mRNA upstream 236121 80781794 ~ 80787795 (-) False LOC118964670
XR_005051873.1 mRNA upstream 236121 80781794 ~ 80787795 (-) True LOC118964670
XM_021604496.2 mRNA upstream 263689 80809362 ~ 80818373 (-) False bmb
XM_021604497.2 mRNA upstream 264007 80809680 ~ 80818373 (-) True bmb
TU503818 other downstream 282425 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 317729 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 366850 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 556226 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 812394 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1397612 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1844982 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2771840 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2772963 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2964680 83510353 ~ 83520273 (-) True G448079

Expression Profile