RNA id: XM_036978532.1


Basic Information

Item Value
RNA id XM_036978532.1
length 2107
RNA type mRNA
GC content 0.45
exon number 7
gene id serpinb1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80839898 ~ 80861365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATATAAAAGACGCGCTAAATGATTTGGGATAATGCGGCATATTTACAGCGCTTTTTTTGTAGTTATCTCAGGAGGAAGGCGTAGTTTCGGTCTTtacttctgtttttgtttctttcACTGGAACTGCGCGTTTTCGATCTTTTCACACAGAGAGAAGCAGAAGGACCAGTCATCAGCCATGGCATCTCTCAGCAGCTCTAACACAGCCTTTGCCTTGGAGCTGTACCACACTCTGGGTCAGAACAACACAGGGAATATCTTCATCTCCCCATTCAGTATCAGCTCAGCTCTGGCCATGGTCTACTTGGGGGCTAAAAGAGACACCGCTGCTCAGATGGCAAAGGCTCTGTCATTCAACTTCACCAAAGACATTCACACAGATTTCCAGACACTCAATGCAGATATCAACTCTCCCTCTGCAACGTACATCCTGAAACTGGCCAACCGTCTGTATGGAGAGAAGACCTGCAACTTCCTGACCgagttcttagAATCCACCCAGAAGTTCTACCGTGCAGATATGAAGGCAGTGGACTTCCTCGGAGCagcagaggagaccagaggacagatcAACAGCTGGGTGGAGCAGCAGACGGAAAATAAAATCAAAGATCTGCTGAAGCAAGGGACAGTCAGTGGTTTGACAAGGCTGGCTCTAGTCAATGCCATCTACTTCAAAGGAAACTGGTTGAACAGATTTGACCAGAAAGACACCAAAGAGATGACCTTCAAAATAAACCAGAGTGAGAGCAAGCCAGTTCAGATGATGCACCAGATAAAGAAGTTCCCCTTTAACTATGTCCCagactataacctccagatcgtGGAGCTTCCCTATGTGGATGAGGAGCTCAGTATGTTTGTCCTGCTGCCTGAGGAGGCCACTGACGGATCTGATCCTCTAGTGAAGCTGGAGAGCGAGCTGACCATGGAGAAACTGGACGAGTGGACCACCAGGTCCAACATGGACACGGGCACGGACATCATAGTTCATCTGCCCAAGTTCAAACTGGAGGAGGACTACGAGCTGAATGATCCCCTGGTCCAGATGGGCATGAAGGATGTGTTCGTCGGGGGCATGGCCGACCTGTCTGGGATGAATGGGAAGGGGGGGCTCTTCCTGTCTACGGTGGCCCATAAGGCCTTTGTGGAGGTGAACGAGGAGGGGACAGAGGCTGCAGCCGCCACTGCTGGGATGATAGCGTTCTGTATGTTCCGAGAGGAACACTTCACGGCTGATCACCCCTTCCTCTTCTTCATCAGGCACAATAAGACCAAAAGCATCCTCTTCCTTGGGaggttctcctctcctcagtaGAATAGTAGTTAAAACTAGTAGAGAGGATTTAACATCATTTACAACAATTATTTGACAGGGGCATTTAACATGAATTAACATTTCTGTAAATGTGCCAGATTTAGCCAGGTAGCTAGTTCCATTAGCACTTGATTTAATCCACTATAAAACCAAATAAAGGAGAAGGTCTAAATGACTTGTCTGTTTGGACAGTATCATTGTGTGTGACCTTAGTTCCCTTAAACATTGTTATGATTCTGAGATTCAACTAAGTGGTCACCACCCTACTTTTTTTATTTTGGCAAGGGGGTTTAAACAGCTGATAatgggggctggagaaatgtagtAAAGTAAGTAGCCTTGCACAAGCCTTGACTTGTGCGAGCTGGAATGGCTAATAGGATCATGaacctatctcctgtttctgtagcatgaggcagcttgatgtacaagtacaccccctggaccgGACCAATGATCTGTATAAagcctggattgctgatgctgtgtattggccaatgagaggctttgaagccaccgatTGGCCGTATTGACACTCCTCAGaagaagcagtcctccataggaattaatGAAATTCTACCgtatttaatttaaatgtttcaAAGACAAGATTTAATacaagtgttttgttgttgtggggACAGTAACAGAACTTTATAAAATTATACTTTAACGAAAATGTTGTTtttaacaattttttttattttttatgtttgtttagctcacataatataaacAAGATGCATGAAGGTGTCAGTAATATAATAAACGTGtcaaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504250 lncRNA downstream 476 80836661 ~ 80839422 (-) True G445616
TU504245 lncRNA downstream 5188 80834401 ~ 80834710 (-) True G445613
TU504242 lncRNA downstream 12408 80827169 ~ 80827490 (-) True G445610
TU504228 lncRNA downstream 33212 80804313 ~ 80806686 (-) True G445596
TU504187 lncRNA downstream 48758 80725771 ~ 80791140 (-) True G445557
TU504256 lncRNA upstream 1552 80862602 ~ 80862843 (-) True G445622
TU504587 lncRNA upstream 144124 81005174 ~ 81032383 (-) True G445927
TU504625 lncRNA upstream 229753 81090803 ~ 81091641 (-) True G445963
TU504647 lncRNA upstream 268009 81129059 ~ 81129571 (-) True G445985
TU504677 lncRNA upstream 315634 81176684 ~ 81260932 (-) True G446011
XM_021604496.2 mRNA downstream 21525 80809362 ~ 80818373 (-) False bmb
XM_021604497.2 mRNA downstream 21525 80809680 ~ 80818373 (-) True bmb
XR_005051872.1 mRNA downstream 52103 80781794 ~ 80787795 (-) False LOC118964670
XR_005051873.1 mRNA downstream 52103 80781794 ~ 80787795 (-) True LOC118964670
XM_021604492.2 mRNA downstream 249778 80573427 ~ 80590120 (-) True mcm3l
XM_021604504.2 mRNA upstream 376932 81237982 ~ 81240184 (-) True LOC110524659
XM_021604505.2 mRNA upstream 404407 81265457 ~ 81271056 (-) True LOC110524660
XM_021604506.2 mRNA upstream 416216 81277266 ~ 81279193 (-) True LOC110524661
XM_036978543.1 mRNA upstream 719268 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 773313 81634363 ~ 81637591 (-) True LOC110524664
TU503818 other downstream 578393 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 613697 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 662818 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 852194 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1108362 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 1082235 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1529605 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2456463 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2457586 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2649303 83510353 ~ 83520273 (-) True G448079

Expression Profile