RNA id: XM_021604504.2


Basic Information

Item Value
RNA id XM_021604504.2
length 2203
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110524659
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81237982 ~ 81240184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTCAAAAAAAAAGTGTCTCTGTAGTGACGGATGCTTGAGCCGTAGTTTTCCCAATGTTCGACACAGTAGACTGTGCGCAGCCTTCACTCCAGTCATCCTGGCGAGCCGTGGCTTAGGCTAAACATACTTCCCCAAACTCCCTTTGTAACACACAGAAAATAAAGGAAAGGAGGCTGAGGAGGAAACTGGAGCTACCCATCTCCGTGCTGCAGAAGCTTTTGGGAGAGTTCTTTATTATTTAAACTTTACGGGACGAAGGCGAGGAGGAGATAATGCAGGCGCGCTACTCCGTCTCCAGCCCCAACTCTCTGGGCGTCGTGCCTTACATTAGCAGTGACCAGAGCTACTACCGGGCAGCGGCGGGTGGAGGGTACACCGGGATGCCAGCTCCCATGAGTATGTACTCTCACGCAGCCCAAGACCAGTATCAGGCCAGCATGGCGCGTGCGTACGGACCGTACACCCCGCAACACCAGCCCAAGGACCTGGTCAAACCTCCGTACAGCTACATCGCCCTTATCACCATGGCGATACAGAACTCACCGGACAAGAAGGTGACCCTAAACGGGATTTATCAGTTTATCATGGAGAGGTTCCCGTTCTACCGAGACAACAAGCAGGGCTGGCAGAACAGCATCCGCCACAACCTGTCCCTCAACGAGTGCTTTGTCAAAGTGGCCCGGGACGATAAGAAGCCCGGCAAAGGCAGCTATTGGACTCTGGACCCGGACTCCTATAACATGTTCGAGAACGGCAGCTTCCTGAGGCGTCGCAGACGGTTCAAGAAGAGTAATGTTCAAAAGGACAAGGATGACAGGCAAGGCAGGGACCTGTCAGGGAGAGGAGCACCGGATATGGAGAACGAGCAGCCCGTGCAGGGCTCACAGCCCGTGCGCATCCAGGACATAAAGACTGAGAACGGGACCTCTACTCCACCACAGGCCGAGTCCCCCAGCCTGCCTGTGCCCAAGATAGAGAGTcctggcagcagcagtagtatgtcCACCGGTAGCCCTCACAGTGTGCCCTCTGCCCGGTCCCTCTCCATGGAGGGCCCCGAGCATCACCACCACGCACAGGCCGCGGCGCAAGGCTTCAGTGTGGACAACATCATGACCTCAGTCCGGGGGTCGCCTCAGGGCACCACGGAGCCTCTTATCGCATCTTCTAGGACAGGTATaaccccctctctatctcttaaCTATTCCCCCAACCAGACGTCTGCTTACAACTCACCAAACTGCAACCAGAACTCAATATCTACAAACTCTAACGCGACGTACCATTGCAACATGCAAGCCATGAGCTTGTACGCCGGGGAACGAGGAGGCCACCTTGCGCCCTCTACCACCGTGGACGAGACTCTGCCCGATTACTCCATCACCACTACGGCCACATCCCCGCTCGGGCATGGCAACCTGAGCGCGGGACAGGACAGTGGTCACCACGCGAACCAGGGCCGACTTGCGTCCTGGTACGGAGACCTGGGACACCTGGGCACAAGCTACCCGGCACAGCAACAGAACTTCCACTCGATGCGAGAGATGTTCGAGTCTCAACGGATCGGTTTGAATAGCTCTCCGGTTAACGGAAGTAATAGCTGTCAGATGGCCTTCCCCTCCGGTCAATCCATCTACCGTACCTCCGGAGCTTTCGTTTATGACTGCGGCAAGTTctgaaaataacaaaaacaaaaacgtttttttaaacGAATaactttaatatatatatatttccttctTTTTGTACTTTAACCTCCCTCATTCCGGTCCTTTATTCATCCCCAAATGGACTAAACAGAATGAGAGTGGTGAGATTTGTTCTGGTGTGTATGAAAGACAGAGGCGCGTGTTACAACATCGAATAACACGTAAGTTTTTATCTCTCTCACTTTGGGAACTTTGTTTTTAAAGAGTGTTGCTTTAACATCCAACATGTTATTAACTTGTTATTCACTGTAAATTGCATATAGTAATTTATTATAGAAAGTAAGGGAGTATAGTTGGATGTTGTGGACCAACCACCAAAAAAGTGTTTCCAAATTGAGGTGCCTTAAATTGTGCTACATATTGTTATTTTATGAAATAGGAGGGGGACTTGTATACCGACGTattctatatatttttgttcCATATTTGTTGAAATTATTCTGAAGGCATTGCTTTGTTTGTCTAATAAATTGACATTCTATTTGATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09396 FOXC; forkhead box protein C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504647 lncRNA downstream 108411 81129059 ~ 81129571 (-) True G445985
TU504625 lncRNA downstream 146341 81090803 ~ 81091641 (-) True G445963
TU504587 lncRNA downstream 205599 81005174 ~ 81032383 (-) True G445927
TU504256 lncRNA downstream 375139 80862602 ~ 80862843 (-) True G445622
TU504250 lncRNA downstream 398560 80836661 ~ 80839422 (-) True G445616
TU504738 lncRNA upstream 23799 81263983 ~ 81264219 (-) True G446059
TU504750 lncRNA upstream 41605 81281789 ~ 81282170 (-) True G446070
TU504754 lncRNA upstream 48366 81288550 ~ 81288822 (-) True G446074
TU504762 lncRNA upstream 57853 81298037 ~ 81298246 (-) True G446082
TU504766 lncRNA upstream 66865 81307049 ~ 81307389 (-) True G446086
XM_036978531.1 mRNA downstream 376617 80839898 ~ 80861365 (-) True serpinb1
XM_036978534.1 mRNA downstream 376656 80839898 ~ 80861326 (-) False serpinb1
XM_036978533.1 mRNA downstream 376776 80839898 ~ 80861206 (-) False serpinb1
XM_036978532.1 mRNA downstream 376932 80839898 ~ 80861050 (-) False serpinb1
XM_021604496.2 mRNA downstream 419609 80809362 ~ 80818373 (-) False bmb
XM_021604505.2 mRNA upstream 25273 81265457 ~ 81271056 (-) True LOC110524660
XM_021604506.2 mRNA upstream 37082 81277266 ~ 81279193 (-) True LOC110524661
XM_036978543.1 mRNA upstream 340134 81580318 ~ 81589232 (-) True LOC110524663
XM_021604511.2 mRNA upstream 394179 81634363 ~ 81637591 (-) True LOC110524664
XM_036978544.1 mRNA upstream 399278 81639462 ~ 81767595 (-) False LOC110524665
TU503818 other downstream 976477 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1011781 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1060902 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1250278 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1506446 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 703101 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 1150471 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 2077329 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 2078452 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 2270169 83510353 ~ 83520273 (-) True G448079

Expression Profile