RNA id: XM_036978545.1


Basic Information

Item Value
RNA id XM_036978545.1
length 5190
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110524665
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81639462 ~ 81767595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAGCCTACACCACCGATTACCAGCGAAACGAAGCGGGATTGGAGTGTGTGGTCGACTTGTTCAAAGCCAAGTGTATCCGAACGGAGAGACCTGGACGAATATTCATTGAAATCAAACGGTGATCTCATATTGGATGGGAACCGTATGATATGTAGGATAGACCTAACGGTTGGTTCTGTCTGCAAACTGCAGCAAtgaccaccacaaccaccactatacCTGCGAAGGGTCGAGGACTTGgcaggtgtgttacctgtggaGCGCGTGGAGGGGCTAGCAAATATGCCGATCAGTCACCCACACCTCTTTGCCTGTGTGTCTAGTTTAACCCCACATGGATGGATGCTATCCCGTTGGAACACAAAGACCTTCAGCATGGTGAGCATGCCTGCCTCTCCGAGCCCACACCTTGCCGGTGCCCTCGCCGCACCTTCGCCCTGCGCCCCAGGCTCCACCTGAAACCGTCATTCGGTCAGCCTATTCTAACCGGAGCACCATGGTGAGACGAGCAACCACTCGGTAATCTTCCAGAGGACCCCGATTCAACTCTCATTCTTCCCCAGTCTTTGTTGTATACATTTTGTTTGCCTGCGCTCTGGGTTTCCTTTGTAACACAGGGTTTACGCAGAGCCGAGTGGACAGGGCAGCAGAGCTCCAGGGGTTTGGCAGTTCTTTGTTGCCGAGATGGCAGCGGGACCAGAGCGGCCGGTGGCAGAGGCGCAGCAGCAGGAGCGGGACCAACCGCCAATTGAGAACGGCTTCGTGTCGCTGGAGCAGACACAGGCCCCCAGGCTGCTGCCGCACGTCGACGGCTCAGTTCTACCGTCTCTCGGGGGGTTTGGGAAACACCAAAAGCAGCTCGTGATCCTGACGTGGATACCGGCTTTATTTATCGGATTTAGCCAGTTTTCGGATTATTTCCTTTTGGCCCAACCGAACGGCACGTGCGTACAGCCTCTGGTCAACGGGAGTAATTGGACCATGGGATCTTTAACGTTACCGGTGACCGTAACGAATGGTGGCATTGGTACACTCGTGCCTTACCTCCCCCTAGACAATGGCACAAGAGACGGTGTCGGTGACAGCGGTGGCATGCAATGCGCGTGTAAGGAGTGGAAGCTCGAACTGCAGACTGGACTCAGTCAGAACGTGGTAACCAAGtggaACCTGGTGTGTGATTCGGCCTGGAAGGTTCACATCGCCAAGTTCTCTCTCTTAGTGGGATCTATCTTTGGCTACCTGGTGATGGGCATCCTGGCCGACTGgttCGGTCGACACCCTGTCCTGATAGTCTCGGTGCTTTTCATGTTGGTGTTTGGTTTGAGTGTAGCGTTCTCCTTCAACGTGACCATGTTCAGCACATTACGTTTCTTTGAGGGCTTCTGTCTGGCTggcctcactctctccctctacatacTGAGGATTGAGTTGTGCCTGCCAGGCTGGCGTTTCTCCATGACCATGGTGGCCAGTTTCCTCATGGTGGGCGGGCAGCTGGTGATGCCCGGGGTGGCGGCTCTGTGTCGTGATTGGCCCGCCCGGGATGATTGGCAGGTCCTGCAGATTTTCATAATCTGCCCCTTCGTCCTCATGCTGCCCTACATCTGgATCTTCCCTGAGTCCCTGCGTTGGCTCCTGGCCACCCAGCACTACCATCGCTCTAAAGCCATGATGCTTTGCATCGCCAGGAAGAACCAGGTCGACATGACAACCGAGCCCAGTGGCGTTCTAACAgAGCTGGAGCATGAGCTGCATAAGAAGCCAAAGAGGACCTGCATCGTCAAGATGACCAGCACCAGAAACCTGTGGAAGAACATCGTCGTGCTCTGTGTCAACTCGTTGACTGGGTACGGTATCCACCACTGTTTTGCCCGCAGTATGATGGACCCGGAGGCTCCTGTGTCGGCCATGTTTCACGCTGACTACTACACTATGGCTGGCATCGCCGTAGCGACGTGCCTGGCGCTGTGCCCGGCCGTGGCATTCATGGGTCGTCGGGGCGGACTGCTCACCTTCATGATCATCACCGCCCTGGCATCACTGTTGCAGCTGGGTCTGCTCAACTTTCTGAGGGACACGCTAAACAGGAAGTTCTCTGTGGCATTCTCCATCATTGGAATGTTCTCCTCTCATGCCGTCAGCACCCTCAGCATCTTCTTCTGCGCTGAGATCACTCCCACCGTcatcaggGGTGGTGGTCTGGGCCTGGTCCTGGCCAGTGCTGGCTTCGGCATGCTGACAGCCCCCATCATGGAGCTCCACAACCAGAAGGGCTACTTCCTGCATCACATGATCTTCGCTGCCTGCACCCTGCTGTGCATCATCTGTCTCCTACTGCTGCCCGAGCCGCGCAACCAGCCTCTGCCAGAGAGCCTCGCGGACGGGGAGAGCTACACTCGCCAGCCCCTCCTCACCCACCGGCCTGGAGAGCAGCACCTCCTTCTCACCAAGCCTGGGGATAGGGACTTATACTCCCGGGTCCACGACACGCCGCGGCATCTTACAGCCACCGGGGGCGCCACAACAGCAGCGGCTACTGCTCTTGCAGCAGTGCCGACATTGTATGTTACCAGAGGGGGGGTGATCAGTAATATTATGGTGTCAAATGGGGTGGGAGGGTCGTCGTAGCAGcagacacacactcctctctgacacacacagacagaggataGGACGAGACTGTGCTGTAGGGATGGCAGGGACTGTCCCAAAGAAACTGTCCCACTCCTGGTCACTGTCATGACTGGCCTGGTCTGATGTGATCATGCAGTCAGGAGAACATGGAATAATTCCGCTTGTCAGATTCTTCCATGAGGAACTCTTTAATTTTAAAACATTCCCATTCTGGTGGGTTTAATGAAAATATTATCCCTCTCATTAGACTTATGATGCGATCTCTCCACGTTGTGTTAGTTTGAAAGGGGAAAATTGAGCTTCCCCAATCATGGACATCCAAGATTTGGACAAAAGAAAAAACGAATTACTATTCAGATGCCCCAGGAGGGCATCAATGGTTGGATTTAAATGGGTCGAAATGTAATATGGTGATGGGTTAGCCTGTAGAGTAGTGATTCTCTGTGTCCTGAAtgtcaccatattccctatatagtgtactgcttttgaccagggcctgcaTCGTGCACTACTCATGACCAGAGGCCtatctatagggaatagggtactattttGGACACTCAATATGATTTAGTAAGACTTTGAGGGCCTGCAATAGAACAGGATCTTGGAACAAAATATGGGAAAGTATGTCTTTGCAATTAACTGAAACTCATTACAATGACTTACATGCATTAGTGCCCATAGGGTAGTTGTTGCCAAGGGTTGTCAGTGTGTAGAATGAGCAGCATGGTTCCATGCTGAGGAGGGATGTCATGGTGTCTGTAAGTTATCAGCAGAGTAGTGTACTCAAACCGCATAGAGATAAATGTATAGAGCAGCAGAACAGACACTGTATTCTATATTTCATTTGAAACGTCATGGCTTTCAACAGTGATGTGTGCTCTATGCATTTAATTTCCCTCTACTTGGTTTTTTTTGCACTAAAATTCAAAGTTAAatcaaatgtaataaaatatttGTCAGCCAACTTGTTTTAGGTGAAACTGCTGCGCTCTAAATTGAATAAAAGGGTAGGCCTATGTACTGTTGCCTACTTGATGGGTTTATTTATGAATTTCTGCCTCCCACCCCCATCAAAAGTCCAAGTTGGCACTTTATGCTTAGTAGGAGTGGAATCACTATGATGACTTTAGAAAACAGAGTATTGCTTCTCCCATGTAATGTTGGTGAATGATGGTTGTCAACACAATGCTGTGAGTGACAGTCGGAAACCTAAAAGCTGTGATGGAAAAGGATTTGAACTTGACCTTTTCATGGTGTTTTTATTTCCGTATTCTATGGTGTTGAGTGGACAATACTAGTTAGTTACTAGTATGTGCAGAatatgtcccaaatagcaccctatttacTACATAAGTGCActacttggtcaaaagtagtgcactacatagggaatagggtacaatttgaGATTGAGCCTGTCTCCACTATGAAACATATGTTTCTGAATGGCTTTATCATGATGGTTCTTTTgcttaaaaaatacaattaaaatggtACAGGCTACTTTGAAAGAATCGTTCAGTAATTCAGTATTTATTTTTGTCATGTTGCCAAGGGCATTCTTGTTGCTTGAAATACCTTTAATTTAGTTAATTCTGACCTTTCCTGTCCCTGTTCTCAACACTGTGGTAAATAATGTTAGTAGTATATTGGTGTTTTTAGGACTTGTTTCAACCCGTCTCTTTAGCACGGTTAAATAATGGCTGGCCATGCCACAAAGCACAATGTCTATCGGGGTTTTGAAATGGTTAGTGTCTAGTTTATTAGGTTAGTACAATAGTGTGATCTAGTTAGAACAGCTGTGACTTACAGGGTGTTTGTATACAAACTCTACTCTAACATACAAATTATTAATACACACCTTACATTGGCGACCTCAGGTGATTTTATTTGGCTCCCCAAGTTTTCTGAAAAGATCGtagaaacaccagcaaatcagctccaactGATTTTAATTTTAGAagtctgttccaaagtattcccacgcataagaGATATGTGACTGTATACAAATGTaaacaaggtttgaaatgatttgtTTTCGTCAAATATATCTATTTGGGCTTCTttcagtcaatttgcagtctacaaattatttttaAGTATGAcctggccccctgaccatccactcaaccaAAATAAATCAGCCGCTGCTGAATCTAGTTAATGATCCCTGATGTATGGACTATCATATCTCATGTACTAGGCACATCAGTTATTTTCATAGGACAATTTGTCACACAATGTACATAGAGGACCTTAAAGGCCAAGTATACTCTATACATTTCTACCATGAACCATTGTTGATGCAAATGGCACATATTTTGACGGTGGACACCTTGTATTGTTTATTTGGTAGTTTGTAAATGTTTATCAATGAAATATTGTGGTAAAATAAATGAAATTCCATGAGTGATTGTCAACCACTAATattttctaaatgttttttttatatgaTGCACTTGTACATATTAAAACCATAAATGTTGTTTTGATAATAAACCACTTAATGTATTGTTTGTCAATAAATGAACACTACCGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU505365 lncRNA downstream 92190 81545988 ~ 81547272 (-) False G446595
TU505366 lncRNA downstream 92190 81545988 ~ 81547272 (-) True G446595
TU505317 lncRNA downstream 224511 81414557 ~ 81414951 (-) True G446555
TU505318 lncRNA downstream 229840 81408942 ~ 81409622 (-) True G446556
TU504814 lncRNA downstream 286884 81352334 ~ 81352578 (-) True G446129
TU505462 lncRNA upstream 1268 81768863 ~ 81769115 (-) True G446686
TU505463 lncRNA upstream 3982 81771577 ~ 81771870 (-) True G446687
TU505468 lncRNA upstream 9299 81776894 ~ 81873158 (-) True G446691
TU505450 lncRNA upstream 26486 81794081 ~ 81825705 (-) True G446674
TU505498 lncRNA upstream 48602 81816197 ~ 81817170 (-) True G446718
XM_021604511.2 mRNA downstream 1871 81634363 ~ 81637591 (-) True LOC110524664
XM_036978543.1 mRNA downstream 50230 81580318 ~ 81589232 (-) True LOC110524663
XM_021604506.2 mRNA downstream 360269 81277266 ~ 81279193 (-) True LOC110524661
XM_021604505.2 mRNA downstream 368406 81265457 ~ 81271056 (-) True LOC110524660
XM_021604504.2 mRNA downstream 399278 81237982 ~ 81240184 (-) True LOC110524659
XM_021604518.2 mRNA upstream 75924 81843519 ~ 81863485 (-) False LOC110524669
XM_021604520.2 mRNA upstream 75924 81843519 ~ 81889907 (-) False LOC110524669
XM_036978549.1 mRNA upstream 77827 81845422 ~ 81863490 (-) False LOC110524669
XM_036978548.1 mRNA upstream 77828 81845423 ~ 81863488 (-) False LOC110524669
XM_036978550.1 mRNA upstream 77828 81845423 ~ 81889913 (-) True LOC110524669
TU503818 other downstream 1377957 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1413261 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1462382 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1651758 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 1907926 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 175690 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 623060 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1549918 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1551041 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 1742758 83510353 ~ 83520273 (-) True G448079

Expression Profile