RNA id: XM_036978548.1


Basic Information

Item Value
RNA id XM_036978548.1
length 2298
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110524669
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81843519 ~ 81889913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGATTGGACCCCTAAATAAATGGAGAAGAACCTCCGAATAACTGGACATGAACAGATCCATATAATACAAAGACGGACGAATTTACGTAGCCCTAACTCTGAAGTCGTtggcccccatgcacaaagccaGGGTTTGGCGGGCAGTTATTTTAGGTCTGCGGAGGTCATCAGTATTGGAGTAGACAGTTTGACTAGAGCGTAAAGACCGTTTTAAAGCCCACCTGACTGCATATCTGAGAGCGAATCAGGATCAGCGGATCCACCCCACACAGCCATAGCCCTGCTTTGCCTAACCATAGCGGTTCCTACATACGCCGTTATGAGCTCCTGGTACGCGTCTGGTTCTCGGAACGACGCTCCCTCCCCACTCCCAGCCGTTATCGAGGAGAAGCCGCCGATGAGGAGAGCGTTTTACCTGCTTCGGAAGACGTCCAAGAATCGCAGCGGTAGCGGtaagcaacagcagcagcaacccgtggcaaacaacaacaacattcctTTCATGATCCACTGCCAGATCGGGAAGGAGATCAAGCACATATGCAGCAACTGCCGCGGCGCAGACCCACATGAAGttGAGGAGGTGGAGCGACTGGCAGCGATGCGATCTGATTCGCTTGTCCCtggcacacacacccctcctatTCGCAGACGGAGCAAGTTTGCCACCCTCGGGCGTCTGTTCAAACCGTGGaaatggaggaagaagaagagcgaGCAGTTCAAGCAGACATCTGCTGTCCTGGAGAGGAAGATGTCGACCcggcagagcagagaggagctGATCAAGAGAGGAGTGCTGAAGGACATCTACGAcaaagacGGAACAGTAgtaacgagaggagaggaggtcaaTATGGAGAATGGGATGTCTCCAGCGTTAGGAGGGTCTGATCCATCACATTGTGATGGAGCTGAGCTGATGGATGGAGCAGTGTCAGCCATAGGTACAGTAGAGTTCCAGTTGTCTGGAGAGGGGACGTCTCCACAAGACCACACCCAGAATCCCAGCCAGACTCCACCCACTAAGAAGGTCATGGTGTATCCAGGCGACGGCGGCGGGGCAGAGTCATCTCATCACGTCCTAAAACAACCCAAACAACCCCCAGCGCTACCACCCAAACCCTTCAACAGACTTCCCAACCACATCACAGagGGTATGCCTGTGAAGCTGCCCTGTATGTCCATGAAGctgtctcctcctctacctcctaaGAAGCTGATGATCTGTGTGCCTGTGGGAGCGGGGGTGAGCATGGAGCCCTCGGCCCTCACCTTCCAAAAgtgcccccctccctctcaccatgTGGGGTCCCTTGGGGGCCACTCCCTACACTACGGGACACTTCCTGTGCCCCTACACCCCCCCAGCCGCATCATCGAGGAACTCAACAAGACCCTGGCCCTTACCATGAAGCGATACGAGAGCTCCCTGCACCATGTGGTTCCCACGGTGATGATAGCATGTGATAACAACAAAGAGAACCTCTCCAACGAAGAAGACTACCAAGACATACCTGGGTCGTACAGGGACGAggaggatgaagatgatgatgaaacACTGTTTTCAAgtacCCTGGCTCTGAAGGTATTGAGGAAGGACTCCTTGGCCATTAAGATCAGTAACCGTCCGTCTGTGAGAGAGCTAGAGGAGAAGAACATCCTGCCCAGACAGTCAGACCAGGAGAGACTGGAGTTCAGGCAGCAAATAGGCACCAAGCTCACACGGAGGTTGAGTCAACGGCCAACTACAGAGGAGTTGGAACAGAGAAACATACTCAAACcgCGTAATGAACTGGAGGAGCTAGATGAGATGAGAGAGCTAAAGAAACGCCTGTCTAGAAagTTGAGTCAGAGGCCTACAGTGGAGGAGCTGAGGGAAGCTAAGATCCTGACCCGCTTCAGTGACTATGTAGAGGTAGCCGACGCCCAGGACTACGACAGGAGGGCAGACAAACCGTGGACAAGACTCACAGCTGCAGATAAGGTAATAACACTCACATGCAGGTGCGCACaccgcacacacatatacaatcacacacacatacaatcacacacaaatgcacagtcATTCGTAGGTTTGAAAAATTacaggaactttcaataaattccctggttttcctgaaatcccggttggaggattcccagaatcagaagggaataagcaggaaatctagAAATCTCCAACCAGGATTGCTgggaaaccagggaatttattgaatgttcctggaattttgcaactCTAATAATGCGTATACTGTGGGGGGGGGTTTTCTGACTGATCTCCGGTTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU505450 lncRNA downstream 19718 81794081 ~ 81825705 (-) True G446674
TU505498 lncRNA downstream 28253 81816197 ~ 81817170 (-) True G446718
TU505463 lncRNA downstream 73553 81771577 ~ 81771870 (-) True G446687
TU505462 lncRNA downstream 76308 81768863 ~ 81769115 (-) True G446686
TU505460 lncRNA downstream 83587 81761636 ~ 81761836 (-) True G446684
TU505525 lncRNA upstream 15949 81879437 ~ 81879840 (-) True G446744
TU505559 lncRNA upstream 77882 81941370 ~ 81941810 (-) True G446774
TU505563 lncRNA upstream 85713 81949201 ~ 81949441 (-) True G446778
TU505584 lncRNA upstream 110131 81973619 ~ 82053804 (-) True G446799
TU505602 lncRNA upstream 156319 82019807 ~ 82045817 (-) True G446814
XM_036978544.1 mRNA downstream 77828 81639462 ~ 81767595 (-) False LOC110524665
XM_036978545.1 mRNA downstream 77828 81639462 ~ 81767595 (-) False LOC110524665
XM_036978546.1 mRNA downstream 77828 81639462 ~ 81767595 (-) True LOC110524665
XM_021604511.2 mRNA downstream 207832 81634363 ~ 81637591 (-) True LOC110524664
XM_036978543.1 mRNA downstream 256191 81580318 ~ 81589232 (-) True LOC110524663
XM_021604522.2 mRNA upstream 411599 82275087 ~ 82346684 (-) True igfbp3
XM_021604524.2 mRNA upstream 569727 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978552.1 mRNA upstream 569727 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978553.1 mRNA upstream 569727 82433215 ~ 82536323 (-) True si:ch211-191a24.3
XM_036978557.1 mRNA upstream 737972 82601460 ~ 82605352 (-) False si:ch211-191a24.4
TU503818 other downstream 1583918 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 1619222 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 1668343 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 1857719 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 2113887 79730987 ~ 79731536 (-) True G444691
TU505560 other upstream 79797 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 527167 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 1454025 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 1455148 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 1646865 83510353 ~ 83520273 (-) True G448079

Expression Profile