RNA id: XM_021604522.2


Basic Information

Item Value
RNA id XM_021604522.2
length 3897
RNA type mRNA
GC content 0.47
exon number 4
gene id igfbp3
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82275087 ~ 82346684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGGCTCTTTTTCCCGCCTGTATAAAACGACAAGTTCGCTTAAAAGAAAATACAGATGGAGAAGTCTAGCCGGTTCGCTGTGACACAGAGAGTCCCCTTAAGCTTACGTGACAACTCGCATACTGTCCCTTTGTGACCAGCTTATCGGCAGAATGCCCGGTCTATGCGTGCTTTGTCTCACTGCGGTGCTCGCTGCATTCACCCGGTTCGCGGAGACCGTTGGACCGGTGGTCCGATGCGAGCCGTGTGACGCCGGGGCTCTTATGGAGTGCAAGCCGCTGTCAAAAGACTGCGCAGAGAGGGTGCGGGAGCCCGGCTGTGGGTGCTGTCTGTCGTGCGCCCTTGCTGAGGGTCAGGCGTGTGGAGTGTACACCGGGCGCTGTGGCTCCGGGCTGATTTGTCAGTTCCAACCCGGGGAGACCCGACCACTGCAAGCCTTGCTAGAGGGACGGGGAGCGTGCTCCAGAGCCGCGTCCAAAAAACTCAACACCTTTCTGCTCCCCGCGCAGAAACAAGAGAACACAAGCGGGGAGCATTCCGGGGCAGGGGATGAACGGCGTGCCAACGGCACCGTGACGACGACCAAGATGGTGGCAGGGGGCGCGGTAGGTGTGGAAGGCGGAGGTGGTGGACATCGGGGGGCGATAGAGGCCAAACCGCCGCTGCACACCAAGCTAGACGTGATCAAGAAGGAGCAGAATAAGAAGAGCCAGAGCTACAAGGTGGAGTCAGTGTCTGGGGGAGTCAACTCCGACATGCACAACTTCTCCCTGGATAACAAGAGGGAGACCGAGTATggcccatgcaggagagagatggaaagcaTCCTGAACAGTCTTAAAATCTCCAATGTGCTCAACCCCAGAGGCTTCCGTATCCCCAACTGTGACAAAAAGGGCTTCTACAAGAAAAAACAAtgccgTCCTTccaaagggaggaagaggggttACTGCTGGTGTGTGGATAAGTACGGTCAGCCTCTCCCTGGCTAtgatggaaaggagagaggagaatccCAGTGCAACAACCTGGAGAACaaatgagaggcagagagaggatggagtgatggaggcaaggcaagaagaagagaggaatgggagagagagatacttttTTTAACTCCTGCCTTGCACGTAACCGTCGAAAGAGTGCCGGACCGTTGACCTCAGGTCACATGACTGCTGggtgggggaggggaagagaggggaagggaggggaagggagaggcagACTGGGACAGCACAGCCTAATAGGCCAAGCCTTCTGTCCATCATCTGCAGCTATCTGCTCTGTGCTATGGGAACCTCTAGCTACCCCTCGTAtgaaaacaacagagagagaaactaaaCATCTGCACTATTattttagagagagaggatggagggacttTTCcactcactttaaagaggacttgTCTGTGACTGTGACCCAACGCAACATgcttgtgtatgtttgtgtgtgtgtatgcatgcatgtgtgagcatgtatgagtgtttgtgtgtgtgtgtatgtgtgtgtaaatgcTGTCTTTCAATAAGCTCAGTTTAGAGGTGGAAGAAAACCTCTTGACATCCAAACCCTGCCCCCTTCTATCCTGTCATGCAGAGACTCCTCCCCTTTCTCAGGATCCATCATTATGAAGTGAAGGCTTATGGGTAGGCCagcctctgacctcttccctgcCATGTTGGACACCACTGGCCTTCCCCACTGTCTCCATAGCAACCAGCTTGTCCCGCCCGATGTGCTGCGTCACATTTACAGGTTTAGGGGGAAGGAAAGGAATGGAGACGATGCCTTAAACCCACActgcccctctccccctcttccccatcCCTGACCCCTACCCCTCCCTTTCTCATATTCCTTGGTTAGCCCTCTGCGGTCCTCataggaccccaggaagagtagctgctgcttttgcaaaagTTCATGGGGATTCAAAAAAAATAATCAACAGGTTCTCacataacgttactaccctgcagcCCTGATCTGGTTAGCTAGCTGGCGGGTTAGGTTAGCATAGTTAGCCAAACCATCACTTCTTCATTCAGGAAATAGGGCCAGTGGTGTTGTCATGAcaacatggtccctctatctgCAGTACTCTTCCTGTCTATGGTGCATATGTCCTGGTGTGGGGTCCTTTAGACTGGGCATGCTCGGTGGGACCGGGCTGCTCTCTATGCCATAGGAGCCAGCTTCGAGGCCAAGCACAACCACTTAAAGCACTTTAGCTGCACCCAACCAACTTCCCTACAGCGCTCCTCACAGTTAAAGACCATCTCTACCCATTGTAGTGTAGTAGTCATAGCTTTTAATTGTTGCAACATTTAACAAGGTTTATAGCACTGTATAacaaaacatcaacaacaacaaaataaaaaacaatgttaCACAAGCACTTCTGACTGTGACTTTACTCAGCCTAGAGAACAAACGCCCCTCCTCACAATTTCCATTCTATGCAAAGTGTGTTTTATTTTTGTTGATATTGTTTCTTGGAGATGCTTGTATGATCTTATGCCAACATAACTCCACCAGGTGGATGCAGCACCAAATATGCATTCAAGAAGCAGACAGGGGGTCTGAGGGAGGGGGCGTGGTCCTCCTAGAAGTGCTCCCTGCTTCCTGTATGACGCTTTCACATAtcctgtgtctgaaatggcaccataTTTCGTATAtaattccctatgggccctgatcaaaagtgatgcactacatagggaataggatgccattgaAGATGCAGACTTGAACAGTGGAGTGTGCACAACAAGGAATGCTAGCCCAGTAGCTCGGTAGCATGGAATTGGATGCACACACACtttaaaacaaacaacaacaacatcttaaaaccaaccaagccgctgagGCTGCAAGCCATTCTATTTGAAGACTTGATTTCGGGGGACGATAATTAAATTACGTTTAAGATATTGCCCCACTCCTTCCCAGTTCTTTGTTAGTCTTATTCTATATTCAAAATGTTTTCGTGGCTATGTGGCTGACACATGTACGGTActtcaaattaaataaataaagaagTTATTTATCTAAGAAAGAATTATAAACTGATCCAAACTACGTTTTTTTCTTACCAACAGTAAGAATCAGTGACTCACTGATTGTAGAGCAAACTCGAAGTTGATTCAGCGTATTTTGGGGAATGTAATCACTAAtgaatgttacattttttttattaacatTTTCTTCTATAATTATTTTTGTAAACTTTAAACATCTCTGGTTTGTTGCCCACGGTAGCTGTCAGTCGGTCAGGCACTCAGGCACTCAGGTCACTGGTCTGTAGACTAATTGGTTTGTAACAAAGTTGGGGTCAGTTTTATTTCTATTCAGTCAATACAATAATCTGAAAATCTTAATGAGGAAatgttgaatttgaatttgaactGACTTTTCTGAATTAACTGAATGGAATGGAGCCCAATCCTGTTGTGTAATCCAATGGGTCTGTAGTCAAGTGAAACTCTCAGTCAGTCCATCGGTCACTGCTCCAACACTTCTCTCCGTACACACCAACGTTCACACAAACGTGCACAGCAATGTGCACGCGATGCCATCCCGTCTCAGTCTCGGTCCACATCCAGGGgcacctctgtctctctaacatTGTGTCACTTTTCTGGTGGTCATGTAAGAATCTCTCTTCTGTTCACGGGTAATTGtactttatttttacattttgtttcaACTTTTATTGTGTAAAGAGTTTTGATTCTTTAAAGAAAAAAAGCTTTTCTTGTTACTAATCTAGAAAATCACACAGCTATTATTTTCTTTGAGGAAGGAACATTATTTTGTTAAAATATAATTTGTATTTAATgtctttttaaaataaaaaaataaacactatTTTCATTTACTGTT

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K10138 IGFBP3; insulin-like growth factor-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU506051 lncRNA downstream 18265 82226703 ~ 82256822 (-) True G447168
TU506048 lncRNA downstream 23747 82226703 ~ 82251340 (-) False G447168
TU506045 lncRNA downstream 33676 82225729 ~ 82241411 (-) False G447168
TU506044 lncRNA downstream 35537 82226703 ~ 82239550 (-) False G447168
TU505723 lncRNA downstream 60547 82212224 ~ 82214540 (-) True G446919
TU506089 lncRNA upstream 2015 82348699 ~ 82349012 (-) True G447204
TU506097 lncRNA upstream 15245 82361929 ~ 82362182 (-) True G447212
TU506101 lncRNA upstream 23292 82369976 ~ 82370187 (-) True G447216
TU506111 lncRNA upstream 50999 82397683 ~ 82397894 (-) True G447226
TU506117 lncRNA upstream 64122 82410806 ~ 82411096 (-) True G447232
XM_036978550.1 mRNA downstream 385174 81845423 ~ 81889913 (-) True LOC110524669
XM_021604520.2 mRNA downstream 385180 81843519 ~ 81889907 (-) False LOC110524669
XM_036978549.1 mRNA downstream 411597 81845422 ~ 81863490 (-) False LOC110524669
XM_036978548.1 mRNA downstream 411599 81845423 ~ 81863488 (-) False LOC110524669
XM_021604518.2 mRNA downstream 411602 81843519 ~ 81863485 (-) False LOC110524669
XM_021604524.2 mRNA upstream 86531 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978552.1 mRNA upstream 86531 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978553.1 mRNA upstream 86531 82433215 ~ 82536323 (-) True si:ch211-191a24.3
XM_036978557.1 mRNA upstream 254776 82601460 ~ 82605352 (-) False si:ch211-191a24.4
XM_021604526.2 mRNA upstream 254776 82601460 ~ 82605379 (-) False si:ch211-191a24.4
TU505560 other downstream 331476 81943285 ~ 81943611 (-) True G446775
TU503818 other downstream 2013582 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 2048886 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 2098007 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 2287383 79982461 ~ 79987704 (-) False G445115
TU506105 other upstream 43971 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 970829 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 971952 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 1163669 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 1524918 83871602 ~ 83873308 (-) True G448411

Expression Profile