RNA id: XM_021604524.2


Basic Information

Item Value
RNA id XM_021604524.2
length 6908
RNA type mRNA
GC content 0.47
exon number 27
gene id si:ch211-191a24.3
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82433215 ~ 82536323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctcatacatagTCTCCACCCCTACACCGTCccaaccctttctctctcacacacagtagaCACATAAAAGTGCAGTAGATATTCTTTGGGGATTTCACAGTTGATAGCAGCCCACTATTAGTCTAATATCCCAGTCATGGAGGAGGGATACAGAATTGACCTGGACTACATCACGGAGCGCATCATCACCGTATCCTTCCCCCAGGCATGCCCTGACCAGACCTACCTCCAGAACCTGCGTGACATCACACAGATGCTCAAATCCAAACATGGCCACAACTACATGGTGATCAACCTCTCAGAGAAGAATGATAGCCTGACCCAGATGAACCCAAAGGTGTTGGACACGGGCTGGCTAGACCTGCTGGCCCCATCCATGGAACAGATGTATGGTGTGTGTAAGACCATGGATAACTGgctccactcacacacacagcatgttCTGGTCATGCACTGTCAGGGTGGTCAGGGCAGAGTTGGGGTGATGGTGGCCTCCTACATCCACTTCAGCAGCATATCAGCCAGTGCAGACCTGGGTCTAGACCACTTTGCCATGAGAAGGTTCTACAACAACAAAGTATCTTCCCTGATGAATCCCTCGCAGAAACGgtatgtGTGGATGTTCAGCAGTCTGCTGAAGGGAGTTATGAACAtggatccctctcctctcttcctcctttgtGTGGTTCTTCACGGCGTTCCCAACATCAATTCTGAGGGAGGATGTCGTCTGTTCCTGAGAGTGTACCAGAGCCTGCAGGTCGTCTGTACTTCAGCAGTCTATCACGTGCGAgcagtgcagacagacagagtttaCTTTGTACTGCAACCAGCTCAACTGCTGAAGGGAGACATAATGGTGGTGTGTTATAATAAAAACCACCAGACAGCCAGCCGAGAGGTCATCTTCAGGCTCCAGTTTCACACTGGCATTATCCACGGTCGCCCCCTGCTTTTCCCCAAGGAAGACCTTGACACAGCTTATAtagATCCTAGGTTTCCAGATGATGGGAAAGTTGAGTTGGTGTTCTCTGAAAGTCCTGAAAGGATGCCAGGCAGTGGTCACTGGCAAAACGGACCCTCTGTCATCGTGGACTACGATACCTGGGACCCCCTGGTTCGACGGGACTCCTATGAGTACATCTCTCCagaaggactagCTCTGCCTCGTAGCCCGGGCCCTGTCGATGGCAACCTATCCGCCAGAGTAAGGAAGGGAAGTAGTGACGAAGGATCTCCGTTTCACCTGGCAACCAGCTGCCCTATCCCCAGTGACCTTAAACTGTCATCCAGCAAAGACTCAGGCCTCTCTATCGCCTCCCAGAGGACCGGAGGTATTACTGCAGTGAGCCCCAAGAGAGGGCCCAGTCAGGACGAACTTACCCAGCTCAGGCGGCTTCTATCTGGTGTCGGCCTGGAACCTCATCTGGAGGACATAACTGACCTCCCAGCCTCCTGTAACGcggtgagggagatggagggggatgaGGCTGGGTTAGGGCAGCCTGTGAAGGCCTCTCCTAGCGAGAGGGAGTCAGACATCCTTTATGATGACGAGGTTAGCCCCGAGGCTAGCATTGGCTCGTTCTCCTCTGAGAGCATACCTGAAGCCCAGGGATTGGTCCAGAGTGGAAGTGGATACTCCACCCCTTCCACCCAATCATGGGTGCAGCAGCAGCAGATAGTCGTCAGGGGGCAGGACAGCCCTGTGGATACACTTTCACTGATTGGTCCAAACACCTTGTCACTTCCAGACATGCCCAATAGGGGGAGCGGCAGTAGAGAGTCagtgaagagaggagtggagggaggggtggggtcgcctgtacagacagacagtcacacacacgccTCACACACCACCCATACACCGTTGCCCTCAGGGGAACCTTGCGGGCAGGAGGAGCTTGCCTCGTTAGCCACAGACATTGATGAGTCCATCGAGCAGCTTAAccagctgatcctagatctggaCCCCACCTTCATACCTGTTCCCACCCgacacacccccctcccccttgctctctccacctccctctacaCCAATGGTAACAACCATACGACGACACATGCCAACGCCAGCCAATCAGGCTGGAAGCACAGACAGGACAGTGATGTCACTGATTACGCAGGATTCTACAGTCCTGGTTGGGGCCGAGCCCAGACATTCCAGGACGCTCCGATCTACAGGCCCAACCTACCTCCCTCCCAGTGTGGTCGTCTCTCCAGGATGGACAGTGTGGACTATGAAGGACAGACTCCAGTAACGGACAGCTGTGACATAGTCCCGTCCACACCAGCATTTCCTATCTCTCCTCCAACGCCCTATGTGAAAAGTTTCCCAGTGTTCTCTTACTTGAGGCCAGGAGAAGGACATTGGGAGAAGAGCGGAATATCACAAGATTCCCAGAGTTTCCTGGACAGTAGTATGAACCAGACTCCAGTGTCGTCGGAAGGACAGCAGTTCCGCTCTGAAATGTCTGTCACTACCGCCTCCTGTCAGAGAATGTTCGGATCCATGCGCTCTGTATCGTCAGGCAGCTCCttcccacacacagacagccaaaCTCCACCTCCAGTGTGGCTGGACAGGACTCCAACGTCCCTgtcttccctgtctccttccccctctctgtcaccCCTCAGTCTCCCCAATGCCCACAGCTCTCCCTGGGAGGCCCCGAGAGGCCTGGAGGGGTCTGTGGACCTGAGCCGTGATGAGAGGAGCAAGGGGTACCAGAGCCAGGGGGATTTAGCCTCTCTGCTGCTGGGGAATGGTGGTCTGGGACTGGAGCACAGCCTGTTGAAGGCAGTGGAGGGCCTGGGGGACCTTGATTTAGGCCTGAACCTGGGTCTGGACCTGGGGCTTGGAGAGGGCAGACTGGGGGGACTACCACCCCTGCTGCCTGAGAAGAGGGTACCGGGGCTAGGCTTGGACCTGTTTGCCAGTAAGCAGCACACTGTGAAGTTTGTTCAGGACACATCCAAGTTCTGGTACAAGCCTGACATCTCCAGAGATCAAGCTATCACTATGCTGAAGGACAGAGAACCTGGATCTTTTGTCGTCAGGGACAGTCACTCATTCCGCGGAGCCTACGGATTGGCTATGAAGGTGGCCacaccccctccctctgtcctgacACAGAGCAAGAAAGTGGGAGGGGACCTGTCTAATGAGCTGgtgaggcacttcctgattgagtGCACTCAGAAAGGGGTACGGCTTAAGGGCTGTCCCAACGAACCCTACTTTGGAAGTCTGACTGCATTGGTCTGTCAACATTCCATCACCCCCTTGGCCCTGCCCTGCAAACTCATCATCCCCGACAGAgATCCTCTGGAAGAGACTAGTGAGCCATCAACACAGTCAGCCACCAACTCTGCTGCTGAGCTACTCAAACAGGGAGCAGCCTGTAATGTGTGGTTCCTGGGCTCAGTAGAGCTGGAGTCTCTAACAGGGTACCAGGCTGTGCAGAAGGCAGCCAGCCTGATTCTGGCCATGGACCCTCCTTCTACCTCCACTGTGGTCCACTTCAAAGTCTCAGCCCAGGGCATCACCCTCACCGACAACCAGAGGAAgctgttCTTCAGGAGACACTACACTGTCAATACAGTCATATTCTGTGCTCTTGACCCACAGGAACGCAAGTGGACAAGAGATGGCTGTTCCACTGCTAAGATCTTTGGTTTTGTGGCGAGGAAGTCGATGAATGGGACGGAGAACGTGTGTCACCTGTTTGCTGAACACGACCCCGAACAACCCGCCAGCGCCATCGTAAACTTTGTCTCCAAGGTGATGATTGGCTCACCGAAGAAATAACACATGCatgaattcacacacacacacacacacacacacacacacacacacacacacacacacacacatacattgttTGTCCTGCTGGTACATACAGCACTAGAATGCTGATGTAGAAGAGAAGGGACTAATGTGTTGCATTATGGGATACTACCTGCAGAAGACAGTAGCAACAACTTTACGCTACacaccaggggcctcatttattgACATTGCATATACACAAAATTTGCCCCAAAATCTGCATGCACCAGTTCTCAACAAAAGTTATCATTTATAAAAACTTGATGTGAGAATGTGATCACCTCGCCGCAAACTTTAGAACATGAACATCTGCTAGTGGTTGAAATATTGTATTACAAGCTGGAAAGTAAGGAGTTTGTAACGGTCTGTTGACAGGTTCACAGCAATTTGCTAGTGTTTTCTCTTTCAGAAACGGACTGACAGTCCTTTTCCAGATACACCATAAATTACAGCAAAAGATTAAAACATCATGCCAACACAGTAAATAGACTGGTAGTTTATGTAAATGGGTATAGGTTACAGTATTGCTGTTCGATCGGAGCGCGACATCATTGCGTATTTAATCTCAGAGCATATACCAAGGCAGGACATAGAAACCCAATAATCTATTGATAAACTAAATATTGAGCAACAATTATTGTTTTGCATTCTGTGGCCTAATGCCAATTGTTCCAAATTATACCTTAACTAATGGGTGTTATGGTCACCCTGAAGGGTGGATGGAGGGCGTTTTTCAGGCAGTTTTAATACTCGTTCACACACAGTTCTAAAACTGTGCCTGCGCCAAATTGATTAATGTCAATATTACTGTACATGTGCAGACTTTTCAGAAATGGGTCATATGACATCTAGTGTGAATGTATGCAATGGTTATACATGAGGCCCCAGAGGTGTACTGTAGGGTGATGTTgccccctagacactgatcttgggtcagtttagcatttcccccactaatggttaggattgggggaaggGAAATCTGATCTGATCCTTTATCTGTTACTAGGATAAGCTTTACCCTGAAGCACATTGAGGActtaaaaaaatactttattaatataactttttgttaTCAGAGGAGGCTGATGGGCAGAGATcactgtaatggctggaatggacaggtatcaaacacatggttttattacaatgagcccgtcctcctttATCTCCGCCCAACAGCCACCACTGctgtttgtgtatatatagtcagGATGTCATTGTAAAGGGAGGTTATCTGTCATGTATGATATGTATTTTTAATTCAGACATGTTTTTAACAAATGTATTTGCTGAAATGTAATCTATATGATAATGTCCCTCTAATCACACAGCATTAGCATTACTAGTCTGTCTCTACCCGCCATGCAGAGTAAAAGGCTCTCAACAAAGAACATGGTCACTTTTAATCACTTCAGCCAATCCCTTCAAAGTCATATTATCAATGAAACACTATACACTTTACAATCCAGTGCTTGACTTGGTGCGGAACACACCAATAGAAACAGTACCGGCACCTACTTCAGTCCAAGTCATGCACTGCTACTACTTTCCTTAGAAGCTTTTCATAtagatactgtatactgtactttTCCTCTGTAAGCCATTAGTATCAACCTGTAAGCCTTCAATCACTTTGGTGCTATTTTCACAAGCATGTGGTGAATTTCCTAATTTCTAAATGAGTGTaacccccacccaccccaccccccaccccctatCAAAAAGACCCCAGCAAATTCATTTTGGATTCATGTTTACTGTATAGGGCAGGGGTATTCCACTCTGACCCTGcaagcctgctggttttctgttgtaCCTGATCATTAAgtacacacacctggtgtcccaacCATTTTAAAATCTATAGGTTTACCAAATTAAGAGATTATCAATTAAGAGTAAAAGGTAAATGTATTTTAACAGATGAGAAGACAATCGTATCAAAAGTAATGTTTGATGACACCCAATAGACGATCTTCTGGCCACAGCCAACAAATGTTATAATTGTGTCTTCCATCCTAGACAAAAACTCATATCTGTTGTCCCATTAAATAGATGTTAAAACATTTGGAAATATATTTAACATGACGCATTATGTTTGAAAGAAGAATAACCCTGAGAAGACATGAAACCATGCAACATGGTGATGTGTTGCTCTTGAGATGAGTGTTGTAGCCATGGTAAGTATGTGAGGaacactgcatcccaaatggcaatctattccctatactgtatagtgcactaAACACACTGGACACAGATGTCAGTTTAGCGTCTAATTGTAACAGTGTCATTGGATTCAGGTTAAAAGTTGGATAAGAAAAGAGCGTTGGTGTATCTGTTCAACACCAAGCAGTTTTACATGTTGAGTCGACGTCATCACATTAATTAATTTGTTGAAATGGATTAGAAACAATGTTGATTAAaacagtttgtgcccagtgggaagtagTGCTCCTCTGGtcagaggtagtgcactatatagggaatcagGTGGCAGTTGGGATGCAGCCTAGTGCTAACCGAAGTCTCTTACTTGTCATTCTGTTGTAGAGTTGATGGGCTTGGTAGGGAACACTTTTTCATACTCACATGTTTCTGTGATCCATGTCTTCTACTTTTGCCCCCAAAGCATAACTTGGGCACTCAATTGTAAAAATGTGTAAATGAATGTTGTATAGTTGGTACTGTAACATTATCCTCACTAACATATTTTcggaaaataaaaaaacaacagttAATGTATTACATATATACATTCATCATATAGGGTACGGCCATATAAATATGTTGTGTTCAGAACTTCTGGATTGAGCAATGTTTTTTCATCATCTGTTGACGATTGTCGAACAAAAACTGCACAAATCGTCTATGTTTTTGCATATGCAAATAATTGACTTGAGTTTTTGAGCTTTTGATAGACAAAAACAGACAATTGATGAACGCATATATGGTTCCATCTGCAGTCATATGTCTCTGTGTGGCCATAGTCTTTTGAGTGTTTTTGCCAGTAGATGGTGCTGATCAATCACAAGAAAATAAACAAATGCAGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU506119 lncRNA downstream 20415 82412593 ~ 82412800 (-) True G447234
TU506117 lncRNA downstream 22119 82410806 ~ 82411096 (-) True G447232
TU506111 lncRNA downstream 35321 82397683 ~ 82397894 (-) True G447226
TU506101 lncRNA downstream 63028 82369976 ~ 82370187 (-) True G447216
TU506097 lncRNA downstream 71033 82361929 ~ 82362182 (-) True G447212
TU506193 lncRNA upstream 21994 82558317 ~ 82559201 (-) True G447294
TU506214 lncRNA upstream 41690 82578013 ~ 82584151 (-) True G447310
TU506258 lncRNA upstream 120041 82656364 ~ 82657449 (-) True G447344
TU506284 lncRNA upstream 159565 82695888 ~ 82699651 (-) True G447363
TU506294 lncRNA upstream 172791 82709114 ~ 82710270 (-) True G447371
XM_021604522.2 mRNA downstream 86531 82275087 ~ 82346684 (-) True igfbp3
XM_036978550.1 mRNA downstream 543302 81845423 ~ 81889913 (-) True LOC110524669
XM_021604520.2 mRNA downstream 543308 81843519 ~ 81889907 (-) False LOC110524669
XM_036978549.1 mRNA downstream 569725 81845422 ~ 81863490 (-) False LOC110524669
XM_036978548.1 mRNA downstream 569727 81845423 ~ 81863488 (-) False LOC110524669
XM_036978557.1 mRNA upstream 65137 82601460 ~ 82605352 (-) False si:ch211-191a24.4
XM_021604526.2 mRNA upstream 65137 82601460 ~ 82605379 (-) False si:ch211-191a24.4
XM_036978558.1 mRNA upstream 65137 82601460 ~ 82605684 (-) True si:ch211-191a24.4
XM_036978560.1 mRNA upstream 430661 82966984 ~ 82974589 (-) True LOC110524677
XM_036978561.1 mRNA upstream 445126 82981449 ~ 83097063 (-) False LOC110524678
TU506105 other downstream 41991 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 489604 81943285 ~ 81943611 (-) True G446775
TU503818 other downstream 2171710 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 2207014 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 2256135 80176762 ~ 80177080 (-) True G445197
TU507016 other upstream 781190 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 782313 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 974030 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 1335279 83871602 ~ 83873308 (-) True G448411
TU507563 other upstream 1379813 83916136 ~ 83916641 (-) True G448452

Expression Profile