RNA id: XM_021604526.2


Basic Information

Item Value
RNA id XM_021604526.2
length 1680
RNA type mRNA
GC content 0.49
exon number 5
gene id si:ch211-191a24.4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82601460 ~ 82605684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACTTCTTCTCTGGTGGGTGGAGTCGGTCACCTGAACAACAAGGTAGGACATATTTCTTGGGTGAGCGAACTGTGATCTCCacaaaaatgtttacattttcgGATTCATAGTTCACCAAACGGAATCACCTCAACTGCCATTATGAGCCAGCCGCACAGAGGGCAAAGGGGGAGAAACGGTGGTCTCCACGAGCATCGGGAACACAGGCCACGACGTGAGCTGCAGCACAATGCTAGACAACCATCAAGCGACAGgtcCTCTTCTCAGCCTCCATATTACAGGGACTCCACACCCCCGCTTAAACATGTGCGGCACCAAGAAGCCCCAGGAGAGGATCATAATGGGTCCAAATGCACCAATATCTGCTCTAGGAGAGGTATCGTGTTGATCTGTTCAGTCCTGACCAATGCCCTGGTCCTGATCTGTGTGGTGGCAGCTCAGATGGTGATGTCAGGCATGTCTGCTATGGGTGGCCTGGCGGGAGGCAGCTTCAACCTTAACACTAACATCCCCTTCGAGGGCCAAGAGCTGCAACAGGTGAGAGACCTGGACATGCAGTACAGCCAGATGAGAGCTCCGGGAATCTACGGGGGCGTGGCATTTGCCCTAGTCTTCGGTGTTGTCTCCCTCTTGTTCGTGGTCTCCGGGAACAAGCCCGCTCACCTGCTGGGCCAGAAGCTGCTGATGGGAGCATTGGTGTTCCAGGGTTTGGGAGCAGTACTCTacgtggtggcggtggggttgtaCCTCCACTTTGTCATCCAGGTAAACAGTACAGACGTGTGTAAGAGAAGGGAGAGGCTGTACGCACGTTCAGGTTTAACCTGGATGAACTGTGATGTGGGAGGGGCAGACGCGGCCGTGGCTTTGTTTGGGCTGATCACTGCGATACTCTACACTGCCGGTACGGTGCTTACGTTCCACACGGTGCGCTGGGTCAGGGGCTACCTGAAGGATCGCAGGCTACACGAGGAGAGGGATAGACGCCCCCCTACTGCCAGCTCCCACCCCCATAGGGCACCACTACGGTCTGATACCGCTCTGTGACGGCGACGCAGGTtgagccccaaatggcaccctattctctatagagtgcactacttttgatagggctctggtcacaatAAATAGATTGTAGGAAATCGGGTGCCATTTCGGACGACACCACAGATGAAACCCGGAAGGGACCAAAGTGCTTTTTCACTCGATCCCTTTTCATTAAAACTGTCTGTCCATTTTTGACAGTAATGGGACTTGCAACTACCCACTGGGCAAagatgtcagttcaacatctagttttgatttactttTGAGTTGTCAACAGTTAAATCAACAAAAATGTGAACCATTTAGTTTTAAAGTAGGGTGGAAAAAAGACATCTCCctaactttttgcaaatccagtAAGTTTGATGTTGATTCCAATATCATCACCTTGAATgttttgttgaaatgacatggaaaaacaatgttgattcacccagtttgtgcccagtgggtaagaCATTTGCTCTGTAAACTTCTGTAAAGCATGGATTTGATATTAATTCCTTTTTAACTGCAACATGAATGACCCACTGATCTCACAGACTGGTCTTGTTATTCATCAATAACacttttgtatgtgtgtgtatatatagaggtTGCATGTTAATAAACCTTTACATTTATCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU506214 lncRNA downstream 17309 82578013 ~ 82584151 (-) True G447310
TU506193 lncRNA downstream 42259 82558317 ~ 82559201 (-) True G447294
TU506150 lncRNA downstream 98902 82500216 ~ 82502558 (-) True G447261
TU506119 lncRNA downstream 188660 82412593 ~ 82412800 (-) True G447234
TU506117 lncRNA downstream 190364 82410806 ~ 82411096 (-) True G447232
TU506258 lncRNA upstream 50985 82656364 ~ 82657449 (-) True G447344
TU506284 lncRNA upstream 90509 82695888 ~ 82699651 (-) True G447363
TU506294 lncRNA upstream 103735 82709114 ~ 82710270 (-) True G447371
TU506311 lncRNA upstream 138132 82743511 ~ 82743859 (-) True G447388
TU506344 lncRNA upstream 166440 82771819 ~ 82775310 (-) False G447418
XM_021604524.2 mRNA downstream 65137 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978552.1 mRNA downstream 65137 82433215 ~ 82536323 (-) False si:ch211-191a24.3
XM_036978553.1 mRNA downstream 65137 82433215 ~ 82536323 (-) True si:ch211-191a24.3
XM_021604522.2 mRNA downstream 254776 82275087 ~ 82346684 (-) True igfbp3
XM_036978550.1 mRNA downstream 711547 81845423 ~ 81889913 (-) True LOC110524669
XM_036978560.1 mRNA upstream 361605 82966984 ~ 82974589 (-) True LOC110524677
XM_036978561.1 mRNA upstream 376070 82981449 ~ 83097063 (-) False LOC110524678
XM_036978563.1 mRNA upstream 376070 82981449 ~ 83097063 (-) True LOC110524678
NM_001124641.1 mRNA upstream 635828 83241207 ~ 83306203 (-) False adcyap1r1b
XM_036976501.1 mRNA upstream 645605 83250984 ~ 83306242 (-) False adcyap1r1b
TU506105 other downstream 210236 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 657849 81943285 ~ 81943611 (-) True G446775
TU503818 other downstream 2339955 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 2375259 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 2424380 80176762 ~ 80177080 (-) True G445197
TU507016 other upstream 712134 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 713257 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 904974 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 1266223 83871602 ~ 83873308 (-) True G448411
TU507563 other upstream 1310757 83916136 ~ 83916641 (-) True G448452

Expression Profile