RNA id: XM_036978561.1


Basic Information

Item Value
RNA id XM_036978561.1
length 3391
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110524678
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82981449 ~ 83097063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCAAGTTTGATGACCGTTCAAATCGAATTTCcccagtcggagctagttttttccgagttcccagttgttttgaacgcggcaataCACATATTCGTGGCGCTACATGATGACGATTTGAGCTTCGGACGTAAACATGGAGAGAGACGCGCTGAAAAGGCAAATCGATCTGTTGCAAAGTCTCATCAACAACCACAAGAGTGTCCATGGTGATGTCCCTTCTACTTCTGGCCGGCAGTGGCACCCAGCGAGGCCACCGCCACGAGGCAGGGGTCACAGCTCATCTTTCACCCCCACATTCCCCTCCCGGGGTGGGCCTTACCCCCCCCAGTCCGCGGAACACTGGAGGAAGACCTACTCCCTCAATAACAAGAGCAGCTCAGCCCAGCAAAGTAGACCTACTATACAGACTGCCAAGCACTCTTTAGAGCAGCCGTTAGTTTCTGCAGAACCCAACTCCTCTACTGGCTTGCTGTCCCTTAATGCTAGAGGCACCTCACAGCCCAGCCACAGCAATAAGGACCTGGCtagaggagagaaggatagaaCAAAATATGCTACGTCTGGGGATCTAACAGGGCCAAGGGGCCAACAGTATGCACTCACAGGGGGAGTGAGAAGAACTGTGACAGGCAGTGGAGCCACAGCTATAGAGTCAGAGACTGAATCAGGCATAGGGAGAACAGGACCTGGGGGTGATGCTTGGCTGGGACTCTCTGGGCTAACAGGGCCTGGACCTCCAGATGACCAGCAGAGAGAGACTAAATATGAGTTTCAGTCCACCACTGAAGAGAAGGGCATGGGACTGCCTGTGAAAGCCACTGCCCCTGGAGAAAATAATACAGAATTGACAAGTGTCCCTGTCTCAGACAaatctactgttactaccacCATGGTCCAGAGCACTGCTCAGCTGCATATCAGACCTCATCACTCTGAGAAAACCAGCACAGGAGGTAAACATACTGTCAATGCAACCACCGGCAACCTCATCCCTAGCGATACGGACCCACCTCTACTtctttcaccccctctctctgcctcccctagTGCCCTACAAGGACCCCAACTAAGCCCCATGTCCAATTCCACACCAGCCCAGCCCCAGACAACATCCTCTCCCCAGAGACACTCCAAGTTCACTTGGGTGAACAGCCATCAGCCAGGAGGAGCTGGGCCCAGCCAGGCCAGAACAGAGGCCCAGCCCCCAGACAAACTCATCACCTCTTCCCCCATCCCAGTCTCCCATCCTGGGCTCCCTAGTAGAAGAGCCTCTGCCCCCATCAAGAAGGTTCCCCGTAGGCTCAGTCTATCCATCGCAGTCCCTAAGACCACCAAGTACACCTGGGTGTCGTCTTCTGCAAGTGGCCAGGCCAGGCTGTCCCGGAAGCCCCTATCACCCAAAGCCCTGGCTCTGCCTCAGAGAGCTCcagagaagggaaagggggaaTCCAAGAAACCCAAATCCCCAAGTCTTTTAGCCAAGCAGCGCAAGGCAGCAGGTGCCTCCACCTCCCTCAGTAGTCTCTACCGCTGGAAGGCAGGGTCTGGAGGAGGGGGGCAGACTGGTACAGGAGGAGGGATAGGGGCCCGACGTGGGTCTGTGTTTCGTTGGACCTCGGAGAAAGAGAACGGGGCCAAGGGGGTGTCCAGTGTCCCTCTATCTGTAACTCAACGCATAATAGTGccgccctcctcctcccctggagGGTTCAAACTCAGGAGCAGGATGAAGATTATCAGGAGGCCGGCTAGCagTGAGTCTGGATCCGAGCGGAGGTCCAGCCCAGCAGACATGACCCTGAACAGCCGCTACTCTCTCCGCCGACGGACACACAGCCCGGTTCGGACACACACCCCGGTCTGGAGCCCGGGAGGTGTGAAGAGGACCATGTCCCGTGAACTGGTCTCGTTCGGCAGACACAAGCTACGACGTCTCTCCCCCAGCCCCTCCAGGACAGGTCCCGCCTCCCCGACCCTGCGTAGCCAGGTGATTCAGAGGGTGTTCAGGACCCGCTATAAGATAGAGACATGCCTGGGTGGAGACGAAGCACACACAGCCAACTATAGCCACACCCTCTCTTGGAGAGCAAAGAGGATCCAGGcggccaggAATGTACTCCAGAGCCGTCTGCGTCCCCCGGGACAGGACAGGCACCCCACAGCCCAGCactggagaggtagagggaggagcaTGCGCTGGATCGGTGGCACCCTCTACAGCGTCTCAGCCAATAAGCTGTCCCGCACCATGACAGCCAGTGCGCCAATCAACAGAACAATGAGATGGTCTAATCCACAGGAGATTTCCCCCACCTCGAGTACTTTCTTCCGGCCATCCAGCACACGTTTTGTGGCCAGTCGTGCGGTTCAGAGGAGTCTAGCCATCATCAGACATGCTCGTCAGAAGAAGACCCAGAAACAGTACTGCATGTACTTCAACCGCTTTGGAAAGTGTAACCGTGGCAACACCTGCCCCTATATCCATGATCCTGATAAGGTTGCCGTCTGtaccagGTTCGTGAGGGGTACATGTAAGCAGACGGATGGGACCTGTCCATTCTCGCACAAGGTGGCCAAGGAGAAGATGCCTGTGTGTTCGTACTTCCTGAAGGGTATATGTAACAACAGTAGCTGTCCCTACAGCCATGTATACGTGTCCTGCAAAGCTGCTGTGTGCCAGGACTTCATCAGGGGGTACTGCCCTCAGGGTCagaagTGTAAGAAGAAGCACACCCTGGTGTGTCCAGACTTCTCCAGTACTGGCTCCTGTCCCCAAGGGGCCCATTGTAAGCTCCAGCACCGTCAGAGGGCCAAACGCACCACTCCTAATGCCAGGGCAACTACAGGCCCCTCCGCCACCCCGGCCAAGAAGGCCCGTACCAAGAGgaccagcctgtcagtGCTTCTCCCTCAGGGTTCTGCTCAGGCAGATCCATCGACACCCTCGTCCTCAGGTCGTCACAACACCAAGCTGCCATCCTTCATCTCCCTTTCCAGCTCCCCAGAGGATGCAGATGCTCCCGACACGCCCCCCGCCGACACGTCAAAGGTCACAGAGAGAACACTGCAGCTCATGCCTCGACTCCAGAACTACAGGAGCTAGAATGGATTCTGCCTGAACATCACCAAATTAACTTTGAAAATACTACAGAGACGTATGTATTGAATGCTAATGGCAGCGCTGAGGTTTCTGACTCACATATATATCTCACCTCTACCATACTCAGGGTCTATAATGTCGTGCTCTTGTTAAAGTTGTTCTGTGGACTCATACATTTCATATAGCAATGATGTTTTTAATACAGATTTGATTGATATGTGAACATGTTTTGGTTCTTTGTAAATTGGAGATTGAATAATTTTGAATAAAACGAATGTTATTACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU506777 lncRNA downstream 54180 82926957 ~ 82927269 (-) True G447797
TU506774 lncRNA downstream 58421 82922826 ~ 82923028 (-) True G447794
TU506769 lncRNA downstream 63360 82917874 ~ 82918089 (-) True G447789
TU506484 lncRNA downstream 73624 82907431 ~ 82907825 (-) True G447556
TU506482 lncRNA downstream 74461 82906490 ~ 82906988 (-) True G447554
TU506876 lncRNA upstream 5038 83102101 ~ 83119406 (-) True G447878
TU506877 lncRNA upstream 9956 83107019 ~ 83117319 (-) True G447879
TU506881 lncRNA upstream 22413 83119476 ~ 83119843 (-) True G447883
TU506869 lncRNA upstream 25011 83122074 ~ 83125934 (-) True G447872
TU506977 lncRNA upstream 132304 83229367 ~ 83232057 (-) True G447956
XM_036978560.1 mRNA downstream 6860 82966984 ~ 82974589 (-) True LOC110524677
XM_036978558.1 mRNA downstream 375765 82601460 ~ 82605684 (-) True si:ch211-191a24.4
XM_021604526.2 mRNA downstream 376070 82601460 ~ 82605379 (-) False si:ch211-191a24.4
XM_036978557.1 mRNA downstream 376097 82601460 ~ 82605352 (-) False si:ch211-191a24.4
XM_036978552.1 mRNA downstream 445126 82433215 ~ 82536323 (-) False si:ch211-191a24.3
NM_001124641.1 mRNA upstream 144144 83241207 ~ 83306203 (-) False adcyap1r1b
XM_036976501.1 mRNA upstream 153921 83250984 ~ 83306242 (-) False adcyap1r1b
XM_021604537.2 mRNA upstream 487673 83584736 ~ 83599713 (-) False LOC110524681
XM_036978568.1 mRNA upstream 487673 83584736 ~ 83599722 (-) True LOC110524681
XM_021604538.2 mRNA upstream 538244 83635307 ~ 83661963 (-) True LOC110524682
TU506105 other downstream 590225 82390655 ~ 82391224 (-) True G447220
TU505560 other downstream 1037838 81943285 ~ 81943611 (-) True G446775
TU503818 other downstream 2719944 80245943 ~ 80261505 (-) True G445220
TU503806 other downstream 2755248 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 2804369 80176762 ~ 80177080 (-) True G445197
TU507016 other upstream 220450 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 221573 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 413290 83510353 ~ 83520273 (-) True G448079
TU507522 other upstream 774539 83871602 ~ 83873308 (-) True G448411
TU507563 other upstream 819073 83916136 ~ 83916641 (-) True G448452

Expression Profile