RNA id: XR_005051879.1


Basic Information

Item Value
RNA id XR_005051879.1
length 439
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118964672
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84090546 ~ 84091472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagcaaggtcaTAACTAGACGGagccgggagagagagagcaatgtaaAAACTAgtcagagacgggagagagagagcaaggtaataactagtcagagacgggagagagagagagcaaggtaatAACTAGTCAGAGAGCAAGgtaaaaactagacagagacgggagagagagagcaaggtaatAACTAGACAGAGAGCAAGGTAAAAACTAGACAGAGAGCAAGGTAAAAACTAgacagagactggagagagagagcaaggtaataactagtcagagacaggagagagagagcaaggtgaTAACTAGTCAGAGAGCAAGGTAAAAACtagacagagacgggagagagagagcaaggtaatAACTAGACAGAAAGCAAGGTAAAAACTAGACAGAGAGCAAGGTAAAAACtagacagagacgggagagagagagcaaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU507556 lncRNA downstream 182475 83907783 ~ 83908071 (-) True G448445
TU507526 lncRNA downstream 193711 83896496 ~ 83896835 (-) True LOC110522893
TU507533 lncRNA downstream 199188 83891121 ~ 83891358 (-) True G448422
TU507531 lncRNA downstream 200523 83889789 ~ 83890023 (-) True G448420
TU507529 lncRNA downstream 203575 83886712 ~ 83886971 (-) True G448418
TU508326 lncRNA upstream 37080 84128552 ~ 84128880 (-) True G449141
TU508332 lncRNA upstream 44452 84135924 ~ 84141100 (-) True G449145
TU508356 lncRNA upstream 88405 84179877 ~ 84208263 (-) True G449168
TU508375 lncRNA upstream 96267 84187739 ~ 84220997 (-) True G449186
TU508367 lncRNA upstream 114812 84206284 ~ 84207157 (-) True G449178
XR_005051880.1 mRNA downstream 139 84088992 ~ 84090407 (-) True LOC118964673
XM_021601344.2 mRNA downstream 193558 83880481 ~ 83896988 (-) False LOC110522893
XM_021604542.2 mRNA downstream 265086 83804300 ~ 83825460 (-) False LOC110524685
XM_021604544.2 mRNA downstream 265127 83804300 ~ 83825419 (-) False LOC110524685
XM_021604549.2 mRNA upstream 29877 84121349 ~ 84138828 (-) True scp2b
XM_021604552.2 mRNA upstream 60306 84151778 ~ 84157364 (-) True magoh
XM_021604553.2 mRNA upstream 66665 84158137 ~ 84173653 (-) True LOC110524694
XR_002473634.2 mRNA upstream 144213 84235685 ~ 84238143 (-) True LOC110524696
trnar-acg-4 mRNA upstream 218458 84309930 ~ 84310002 (-) True trnar-acg-4
TU507563 other downstream 173905 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 217238 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 570273 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 770831 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1251316 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1354209 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1395370 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1786261 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2457366 86548838 ~ 86549878 (-) True G451271

Expression Profile