RNA id: XM_021604549.2


Basic Information

Item Value
RNA id XM_021604549.2
length 1733
RNA type mRNA
GC content 0.44
exon number 5
gene id scp2b
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84121349 ~ 84138828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATAAAGTGGTTTCACAACCATAGAGAATtgtagaggcctctagtggccaaaagacGTTTGAGtacgggcagcgccattgagggcttccaccattttaatgtagttAACCGGGTGAGTCTTTCAACTTCATTCCCTCTTGGtggggtcatcaggagggatcagctaatcgtgaagaagaaaatatactactttaaaatggagattgcCAGCGCCATTGAGGCAATGATTTCACAGACGCTAGAAGATCAGAAACAAAAaggagtcctctatctatctctatgttcGCAACAGCAGGCAGAGTTGCACACCAGCTGTGTCGGCCTCTGAACAATGGTTGTTTCACATAACAAAATGCGCGAATCGCAGGTTGTAAGctcTCAGAGGATCCAGTCAGTTAACACCAATGCAGAGCGTACCCTGGAGGGCTTCAAGGCCCATGCAGTCTTCCAGGAGATCAACAAGAAGCTGGAGGAGGATGGGGAGTCATTTGTGAAGAAGATTGGAGGGGTGTTTTCCTTTAAGGTGAAGGATGGTCCGGATGGTCAGGAAGCGACCTGGATAGTGGATGTGAAGAATGGCAAGGGTTGCGTTCACAATGACACAGCAAAGAAAGCAGACTGCACCATTTCCATGTCAGATGCAGACCTGCTGGCCTTGATGACGGGGAAAATGAACCCACAGACAGCATTCTTCCAAGGCAAGCTGAAGATCACAGGGAACATGGGAATGGCCATGAAGCTCCAGAGTCTGCAGCTCCAGCCAGGCAAAGCCAAGCTGTGAGGTAGAACCTGGGGTGAGGCAGAGGTTACCGCCCTAgcgctggtctaggatcagtgctTCATATcacaatcctaaccttaaccactagggGTTACAACAACAAACCTGGTCCAAGACCTGCACTAAGGGGTAACTTCTACATTTTCTGTAGCTCAACAGCAGCCCCCACCATCCAACTAGTAGTGTGAGGAGGGGGGGACGCACTGTAGGAGGAAACGATGGTAGTAGagatggaatgatggatggagagATACTGTTTTCAacatctacctctctttctctgacccCCTCTGTCTTTTTCTAATACATTAAGGACCAGAACACATTAGACTAGAGATATACCATAGGGGTGTAGTCTACTCTCTCCAACTGTGTAATTTTATATTTATTCAAACTGATTTATTATGACTCACAGAATATGTTTGTATGATGTCATTAATTGAATCATGCCCCTCCTTCGATTTCTGACCTTTTTCCTCTTAAGTTTCATGTGTGTATTGGTAATGGAAATACAATTGCTCTTGACAATTGGGACAGGATGAATCATGTCTTGTATGGTCTCAGAGCTGTGCTACACAGTAATTTCTCCCTATTCAGCCTTTGAGAGATGAATGGATAAAACAGTGAAGTGCCTCTCAGGTGTGGAATATTCCCTGGTGTCATGAACAAGTGTAAAAACATTGATACTGTCTCATAATATCAGCTTCATAATATCTAAAACAGGACTGAATGGATGGACCACTGaatgttacatttacattttagtcatttagcagacactcttatccagagtgacttacagtgagtagtgagtgcatacatttccctactctgttactgtgttactttcAGCCATGTTGTTATGACTCTGACCATCTGACCCACTGATGATGCTAAAGTGATTTCTACTAAATAAACTCTCTTACTAATAAACACTGAAATAAGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU508257 lncRNA downstream 30473 84089855 ~ 84090876 (-) True G449074
TU507556 lncRNA downstream 213278 83907783 ~ 83908071 (-) True G448445
TU507526 lncRNA downstream 224514 83896496 ~ 83896835 (-) True LOC110522893
TU507533 lncRNA downstream 229991 83891121 ~ 83891358 (-) True G448422
TU507531 lncRNA downstream 231326 83889789 ~ 83890023 (-) True G448420
TU508356 lncRNA upstream 41049 84179877 ~ 84208263 (-) True G449168
TU508375 lncRNA upstream 48911 84187739 ~ 84220997 (-) True G449186
TU508367 lncRNA upstream 67456 84206284 ~ 84207157 (-) True G449178
TU508374 lncRNA upstream 71981 84210809 ~ 84211925 (-) True G449185
TU508366 lncRNA upstream 79125 84217953 ~ 84219181 (-) True G449177
XM_036978572.1 mRNA downstream 1006 84066174 ~ 84120343 (-) False podn
XM_036978573.1 mRNA downstream 22387 84067536 ~ 84098962 (-) True podn
XM_036978571.1 mRNA downstream 22389 84066174 ~ 84098960 (-) False podn
XR_005051879.1 mRNA downstream 29877 84090546 ~ 84091472 (-) True LOC118964672
XR_005051880.1 mRNA downstream 30942 84088992 ~ 84090407 (-) True LOC118964673
XM_021604552.2 mRNA upstream 12950 84151778 ~ 84157364 (-) True magoh
XM_021604553.2 mRNA upstream 19309 84158137 ~ 84173653 (-) True LOC110524694
XR_002473634.2 mRNA upstream 96857 84235685 ~ 84238143 (-) True LOC110524696
trnar-acg-4 mRNA upstream 171102 84309930 ~ 84310002 (-) True trnar-acg-4
XR_005051593.1 mRNA upstream 185152 84323980 ~ 84326565 (-) False LOC110522894
TU507563 other downstream 204708 83916136 ~ 83916641 (-) True G448452
TU507522 other downstream 248041 83871602 ~ 83873308 (-) True G448411
TU507137 other downstream 601076 83510353 ~ 83520273 (-) True G448079
TU507016 other downstream 801634 83317513 ~ 83319715 (-) False G447993
TU510077 other upstream 1203960 85342788 ~ 85343072 (-) True G450676
TU510133 other upstream 1306853 85445681 ~ 85471880 (-) False lurap1
TU510180 other upstream 1348014 85486842 ~ 85487158 (-) True G450752
TU510403 other upstream 1738905 85877733 ~ 85878974 (-) True G450957
TU510750 other upstream 2410010 86548838 ~ 86549878 (-) True G451271

Expression Profile